{
    "type": "genome",
    "identifier": "GCA_026982355.1",
    "organism": "Thermodesulfovibrio sp.",
    "title": "Thermodesulfovibrio sp.",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "Portland State University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_026982355.1",
        "bioproject": "PRJNA821212",
        "biosample": "SAMN27357679",
        "wgs_master": "JALSHG000000000.1",
        "refseq_category": "na",
        "taxid": "2067987",
        "species_taxid": "2067987",
        "organism_name": "Thermodesulfovibrio sp.",
        "infraspecific_name": "",
        "isolate": "354-166_metabat1_scaf2bin.078",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/12/19",
        "asm_name": "ASM2698235v1",
        "submitter": "Portland State University",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/982/355/GCA_026982355.1_ASM2698235v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-12-19",
    "dateModified": "2022-12-19",
    "datePublished": "2022-12-19",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Thermodesulfovibrio sp."
        ],
        "sample_taxid": [
            "2067987"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Atlantic Ocean: Mid Atlantic Ridge"
        ],
        "sample_host_location_id": [],
        "data_size": "0.748 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 4.17,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2621406",
        "Number of Sequences": "119",
        "Longest Sequences (bp)": "99604",
        "N50 (bp)": "29387",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "52.6",
        "Number of CDSs": "2298",
        "Average Protein Length": "322.6",
        "Coding Ratio (%)": "84.8",
        "Number of rRNAs": "3",
        "Number of tRNAs": "44",
        "Number of CRISPRs": "3"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 4.17,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_013152795.1",
                "gtdb_species": "s__JAADFS01 sp013152795",
                "ani": 88.9273,
                "matched_fragments": 574,
                "total_fragments": 818,
                "gtdb_taxonomy": "d__Bacteria;p__Nitrospirota;c__Thermodesulfovibrionia;o__UBA6902;f__UBA6902;g__JAADFS01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_015491705.1",
                "gtdb_species": "s__JAADFS01 sp015491705",
                "ani": 86.3239,
                "matched_fragments": 459,
                "total_fragments": 818,
                "gtdb_taxonomy": "d__Bacteria;p__Nitrospirota;c__Thermodesulfovibrionia;o__UBA6902;f__UBA6902;g__JAADFS01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002897895.1",
                "gtdb_species": "s__BMS3ABIN06 sp002897895",
                "ani": 77.062,
                "matched_fragments": 105,
                "total_fragments": 818,
                "gtdb_taxonomy": "d__Bacteria;p__Nitrospirota;c__Thermodesulfovibrionia;o__UBA6902;f__UBA6902;g__BMS3ABIN06",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.86",
                "min_intra_species_ani": "99.83",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_002897915.1",
                "gtdb_species": "s__BMS3Abin09 sp002897915",
                "ani": 76.2056,
                "matched_fragments": 55,
                "total_fragments": 818,
                "gtdb_taxonomy": "d__Bacteria;p__Nitrospirota;c__Thermodesulfovibrionia;o__UBA6902;f__UBA6902;g__BMS3Abin09",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.52",
                "min_intra_species_ani": "99.52",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_003599505.1",
                "gtdb_species": "s__SURF-23 sp003599505",
                "ani": 76.171,
                "matched_fragments": 51,
                "total_fragments": 818,
                "gtdb_taxonomy": "d__Bacteria;p__Nitrospirota;c__Thermodesulfovibrionia;o__UBA6902;f__UBA6902;g__SURF-23",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016217725.1",
                "gtdb_species": "s__SURF-23 sp016217725",
                "ani": 75.8753,
                "matched_fragments": 63,
                "total_fragments": 818,
                "gtdb_taxonomy": "d__Bacteria;p__Nitrospirota;c__Thermodesulfovibrionia;o__UBA6902;f__UBA6902;g__SURF-23",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003599275.1",
                "gtdb_species": "s__SURF-23 sp003599275",
                "ani": 75.8682,
                "matched_fragments": 52,
                "total_fragments": 818,
                "gtdb_taxonomy": "d__Bacteria;p__Nitrospirota;c__Thermodesulfovibrionia;o__UBA6902;f__UBA6902;g__SURF-23",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.523,
        "cell_length": 0.389,
        "doubling_h": 1.306,
        "growth_tmp": 61.04,
        "optimum_tmp": 60.0,
        "optimum_ph": 7.0,
        "genome_size": 2004483.38,
        "gc_content": 34.295,
        "coding_genes": 2028.0,
        "rRNA16S_genes": 1.0,
        "tRNA_genes": 47.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.333,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 0.0,
        "thermophilic_range_tmp": 1.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.666,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.333,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Nitrospirota",
        "c__Thermodesulfovibrionia",
        "o__UBA6902",
        "f__UBA6902",
        "g__JAADFS01",
        "s__JAADFS01 sp026982355"
    ],
    "_genome_taxon": [
        "Thermodesulfovibrio",
        "sp.",
        "d__Bacteria",
        "p__Nitrospirota",
        "c__Thermodesulfovibrionia",
        "o__UBA6902",
        "f__UBA6902",
        "g__JAADFS01",
        "s__JAADFS01 sp026982355",
        "Bacteria",
        "Nitrospirota",
        "Thermodesulfovibrionia",
        "UBA6902",
        "UBA6902",
        "JAADFS01",
        "JAADFS01",
        "sp026982355"
    ],
    "_meo": [
        {
            "id": "MEO_0000031",
            "label": "hydrothermal vent"
        }
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}