{ "type": "genome", "identifier": "GCA_026982585.1", "organism": "Alphaproteobacteria bacterium", "title": "Alphaproteobacteria bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Portland State University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_026982585.1", "bioproject": "PRJNA821212", "biosample": "SAMN27357669", "wgs_master": "JALSGW000000000.1", "refseq_category": "na", "taxid": "1913988", "species_taxid": "1913988", "organism_name": "Alphaproteobacteria bacterium", "infraspecific_name": "", "isolate": "354-166_maxbin2_scaf2bin.177", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/12/19", "asm_name": "ASM2698258v1", "submitter": "Portland State University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/982/585/GCA_026982585.1_ASM2698258v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-12-19", "dateModified": "2022-12-19", "datePublished": "2022-12-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Alphaproteobacteria bacterium" ], "sample_taxid": [ "1913988" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Atlantic Ocean: Mid Atlantic Ridge" ], "sample_host_location_id": [], "data_size": "0.672 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.52, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2474073", "Number of Sequences": "435", "Longest Sequences (bp)": "34822", "N50 (bp)": "7994", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "70.6", "Number of CDSs": "1982", "Average Protein Length": "313.3", "Coding Ratio (%)": "75.3", "Number of rRNAs": "0", "Number of tRNAs": "41", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Geminicoccus roseus", "strain": "strain=DSM 18922", "accession": "GCA_000427665.1", "taxid": 404900, "species_taxid": 404900, "relation_to_type": "type", "validated": true, "ani": 76.7432, "matched_fragments": 160, "total_fragments": 602, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thalassobaculum fulvum", "strain": "strain=KCTC 42651", "accession": "GCA_014652915.1", "taxid": 1633335, "species_taxid": 1633335, "relation_to_type": "type", "validated": true, "ani": 76.6892, "matched_fragments": 164, "total_fragments": 602, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Magnetospirillum kuznetsovii", "strain": "strain=LBB-42", "accession": "GCA_003284725.1", "taxid": 2053833, "species_taxid": 2053833, "relation_to_type": "type", "validated": true, "ani": 76.471, "matched_fragments": 93, "total_fragments": 602, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Magnetospirillum caucaseum", "strain": "strain=SO-1", "accession": "GCA_000342045.1", "taxid": 1244869, "species_taxid": 1244869, "relation_to_type": "type", "validated": true, "ani": 76.4139, "matched_fragments": 126, "total_fragments": 602, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hypericibacter terrae", "strain": "strain=R5913", "accession": "GCA_008728855.1", "taxid": 2602015, "species_taxid": 2602015, "relation_to_type": "type", "validated": true, "ani": 76.4122, "matched_fragments": 96, "total_fragments": 602, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tistlia consotensis", "strain": "strain=DSM 21585", "accession": "GCA_900188055.1", "taxid": 1321365, "species_taxid": 1321365, "relation_to_type": "type", "validated": true, "ani": 76.3916, "matched_fragments": 195, "total_fragments": 602, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stella humosa", "strain": "strain=DSM 5900", "accession": "GCA_003751345.1", "taxid": 94, "species_taxid": 94, "relation_to_type": "type", "validated": true, "ani": 76.3908, "matched_fragments": 136, "total_fragments": 602, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tistlia consotensis", "strain": "strain=USBA 355", "accession": "GCA_900177295.1", "taxid": 1321365, "species_taxid": 1321365, "relation_to_type": "type", "validated": true, "ani": 76.3897, "matched_fragments": 198, "total_fragments": 602, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stella humosa", "strain": "strain=ATCC 43930", "accession": "GCA_006738645.1", "taxid": 94, "species_taxid": 94, "relation_to_type": "type", "validated": true, "ani": 76.3826, "matched_fragments": 139, "total_fragments": 602, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Magnetospirillum marisnigri", "strain": "strain=SP-1", "accession": "GCA_001650715.1", "taxid": 1285242, "species_taxid": 1285242, "relation_to_type": "type", "validated": true, "ani": 76.3671, "matched_fragments": 102, "total_fragments": 602, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseospirillum parvum", "strain": "strain=930I", "accession": "GCA_900100455.1", "taxid": 83401, "species_taxid": 83401, "relation_to_type": "type", "validated": true, "ani": 76.3426, "matched_fragments": 132, "total_fragments": 602, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovibrio sodomensis", "strain": "strain=DSM 9895", "accession": "GCA_016583645.1", "taxid": 1088, "species_taxid": 1088, "relation_to_type": "type", "validated": true, "ani": 76.2979, "matched_fragments": 123, "total_fragments": 602, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospirillum ramasamyi", "strain": "strain=M2T2B2", "accession": "GCA_003233655.1", "taxid": 682998, "species_taxid": 682998, "relation_to_type": "type", "validated": true, "ani": 76.2232, "matched_fragments": 134, "total_fragments": 602, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium composti", "strain": "strain=CC-YTH430", "accession": "GCA_004801285.1", "taxid": 2675109, "species_taxid": 2675109, "relation_to_type": "type", "validated": true, "ani": 76.18, "matched_fragments": 87, "total_fragments": 602, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospirillum halopraeferens", "strain": "strain=DSM 3675", "accession": "GCA_000429625.1", "taxid": 34010, "species_taxid": 34010, "relation_to_type": "type", "validated": true, "ani": 76.1797, "matched_fragments": 175, "total_fragments": 602, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Inquilinus limosus", "strain": "strain=DSM 16000", "accession": "GCA_000423185.1", "taxid": 171674, "species_taxid": 171674, "relation_to_type": "type", "validated": true, "ani": 76.1009, "matched_fragments": 170, "total_fragments": 602, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arboricoccus pini", "strain": "strain=B29T1", "accession": "GCA_900187945.1", "taxid": 1963835, "species_taxid": 1963835, "relation_to_type": "type", "validated": true, "ani": 76.0308, "matched_fragments": 56, "total_fragments": 602, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseospira goensis", "strain": "strain=JA135", "accession": "GCA_014197795.1", "taxid": 391922, "species_taxid": 391922, "relation_to_type": "type", "validated": true, "ani": 75.9907, "matched_fragments": 134, "total_fragments": 602, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Magnetospirillum gryphiswaldense", "strain": "strain=MSR-1", "accession": "GCA_002995515.1", "taxid": 55518, "species_taxid": 55518, "relation_to_type": "type", "validated": true, "ani": 75.9013, "matched_fragments": 71, "total_fragments": 602, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas oryzae", "strain": "strain=KCTC 42542", "accession": "GCA_008386565.1", "taxid": 1608942, "species_taxid": 1608942, "relation_to_type": "type", "validated": true, "ani": 75.8647, "matched_fragments": 111, "total_fragments": 602, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas deserti", "strain": "strain=M3", "accession": "GCA_001982615.1", "taxid": 1817963, "species_taxid": 1817963, "relation_to_type": "type", "validated": true, "ani": 75.8363, "matched_fragments": 138, "total_fragments": 602, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus salipaludis", "strain": "strain=WN007", "accession": "GCA_002287065.1", "taxid": 2032623, "species_taxid": 2032623, "relation_to_type": "type", "validated": true, "ani": 75.831, "matched_fragments": 58, "total_fragments": 602, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Magnetospirillum gryphiswaldense", "strain": "strain=MSR-1", "accession": "GCA_000513295.1", "taxid": 55518, "species_taxid": 55518, "relation_to_type": "type", "validated": true, "ani": 75.8071, "matched_fragments": 78, "total_fragments": 602, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus chinensis", "strain": "strain=CGMCC 1.7655", "accession": "GCA_900102885.1", "taxid": 525640, "species_taxid": 525640, "relation_to_type": "type", "validated": true, "ani": 75.6726, "matched_fragments": 66, "total_fragments": 602, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodoplanes roseus", "strain": "strain=DSM 5909", "accession": "GCA_003258865.1", "taxid": 29409, "species_taxid": 29409, "relation_to_type": "type", "validated": true, "ani": 75.6201, "matched_fragments": 119, "total_fragments": 602, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.52, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCA_015490605.1", "gtdb_species": "s__HRBIN39 sp015490605", "ani": 79.0283, "matched_fragments": 239, "total_fragments": 602, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Geminicoccales;f__Geminicoccaceae;g__HRBIN39", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.05", "min_intra_species_ani": "97.05", "mean_intra_species_af": "0.84", "min_intra_species_af": "0.84", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_002898955.1", "gtdb_species": "s__HRBIN39 sp002898955", "ani": 78.6615, "matched_fragments": 197, "total_fragments": 602, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Geminicoccales;f__Geminicoccaceae;g__HRBIN39", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002898275.1", "gtdb_species": "s__HRBIN40 sp002898275", "ani": 77.6411, "matched_fragments": 223, "total_fragments": 602, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Geminicoccales;f__Geminicoccaceae;g__HRBIN40", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_009908425.1", "gtdb_species": "s__JAAAPF01 sp009908425", "ani": 76.9891, "matched_fragments": 157, "total_fragments": 602, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Geminicoccales;f__Geminicoccaceae;g__JAAAPF01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_007131045.1", "gtdb_species": "s__SLRI01 sp007131045", "ani": 76.8261, "matched_fragments": 138, "total_fragments": 602, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Geminicoccales;f__Geminicoccaceae;g__SLRI01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000427665.1", "gtdb_species": "s__Geminicoccus roseus", "ani": 76.7287, "matched_fragments": 161, "total_fragments": 602, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Geminicoccales;f__Geminicoccaceae;g__Geminicoccus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_902826935.1", "gtdb_species": "s__CADEGR01 sp902826935", "ani": 76.6682, "matched_fragments": 155, "total_fragments": 602, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Geminicoccales;f__Geminicoccaceae;g__CADEGR01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.81", "min_intra_species_ani": "98.69", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.92", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_011523425.1", "gtdb_species": "s__WTGU01 sp011523425", "ani": 76.5518, "matched_fragments": 122, "total_fragments": 602, "gtdb_taxonomy": 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