{
    "type": "genome",
    "identifier": "GCA_026983495.1",
    "organism": "Sedimenticola sp.",
    "title": "Sedimenticola sp.",
    "description": "derived from metagenome; fragmented assembly",
    "data type": "Genome sequencing and assembly",
    "organization": "Portland State University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_026983495.1",
        "bioproject": "PRJNA821212",
        "biosample": "SAMN27360426",
        "wgs_master": "JALWHU000000000.1",
        "refseq_category": "na",
        "taxid": "1940285",
        "species_taxid": "1940285",
        "organism_name": "Sedimenticola sp.",
        "infraspecific_name": "",
        "isolate": "M17_maxbin2_scaf2bin.092",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/12/19",
        "asm_name": "ASM2698349v1",
        "submitter": "Portland State University",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/983/495/GCA_026983495.1_ASM2698349v1",
        "excluded_from_refseq": "derived from metagenome; fragmented assembly",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-12-19",
    "dateModified": "2022-12-19",
    "datePublished": "2022-12-19",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Sedimenticola sp."
        ],
        "sample_taxid": [
            "1940285"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Pacific Ocean: Lau Basin"
        ],
        "sample_host_location_id": [],
        "data_size": "0.786 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 86.57,
        "contamination": 0.52,
        "strain_heterogeneity": 100.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2705389",
        "Number of Sequences": "977",
        "Longest Sequences (bp)": "22800",
        "N50 (bp)": "3327",
        "Gap Ratio (%)": "0.027390",
        "GCcontent (%)": "59.7",
        "Number of CDSs": "1784",
        "Average Protein Length": "268.5",
        "Coding Ratio (%)": "53.1",
        "Number of rRNAs": "0",
        "Number of tRNAs": "34",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Thiolapillus brandeum",
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                "accession": "GCA_000828615.1",
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                "species_taxid": 1076588,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 257,
                "total_fragments": 390,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thioalkalivibrio sulfidiphilus",
                "strain": "strain=HL-EbGR7",
                "accession": "GCA_000021985.1",
                "taxid": 1033854,
                "species_taxid": 1033854,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6913,
                "matched_fragments": 66,
                "total_fragments": 390,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sulfurivermis fontis",
                "strain": "strain=JG42",
                "accession": "GCA_004001245.1",
                "taxid": 1972068,
                "species_taxid": 1972068,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.2047,
                "matched_fragments": 54,
                "total_fragments": 390,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thioalbus denitrificans",
                "strain": "strain=DSM 26407",
                "accession": "GCA_003337735.1",
                "taxid": 547122,
                "species_taxid": 547122,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.0991,
                "matched_fragments": 67,
                "total_fragments": 390,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thiohalobacter thiocyanaticus",
                "strain": "strain=Hrh1",
                "accession": "GCA_003932505.1",
                "taxid": 585455,
                "species_taxid": 585455,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.4507,
                "matched_fragments": 65,
                "total_fragments": 390,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 86.57,
            "contamination": 0.52,
            "strain_heterogeneity": 100.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000828615.1",
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                "ani": 81.0925,
                "matched_fragments": 258,
                "total_fragments": 390,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Chromatiales;f__Sedimenticolaceae;g__Thiolapillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_011051425.1",
                "gtdb_species": "s__Thiolapillus brandeum_A",
                "ani": 79.8749,
                "matched_fragments": 159,
                "total_fragments": 390,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Chromatiales;f__Sedimenticolaceae;g__Thiolapillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003972985.1",
                "gtdb_species": "s__Thiolapillus sp003972985",
                "ani": 79.4151,
                "matched_fragments": 162,
                "total_fragments": 390,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Chromatiales;f__Sedimenticolaceae;g__Thiolapillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.52",
                "min_intra_species_ani": "99.52",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_012962365.1",
                "gtdb_species": "s__Thiolapillus sp012962365",
                "ani": 78.6493,
                "matched_fragments": 125,
                "total_fragments": 390,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Chromatiales;f__Sedimenticolaceae;g__Thiolapillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000801295.1",
                "gtdb_species": "s__MONJU sp000801295",
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                "matched_fragments": 89,
                "total_fragments": 390,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Chromatiales;f__Sedimenticolaceae;g__MONJU",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_011051655.1",
                "gtdb_species": "s__DRKS01 sp011051655",
                "ani": 77.721,
                "matched_fragments": 63,
                "total_fragments": 390,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Chromatiales;f__Sedimenticolaceae;g__DRKS01",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000021985.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Ectothiorhodospirales;f__Ectothiorhodospiraceae;g__Thioalkalivibrio_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_011051715.1",
                "gtdb_species": "s__HyVt-443 sp011051715",
                "ani": 77.6778,
                "matched_fragments": 99,
                "total_fragments": 390,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Chromatiales;f__Sedimenticolaceae;g__HyVt-443",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000377945.1",
                "gtdb_species": "s__Thioalkalivibrio_A sulfidiphilus_A",
                "ani": 77.6391,
                "matched_fragments": 67,
                "total_fragments": 390,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Ectothiorhodospirales;f__Ectothiorhodospiraceae;g__Thioalkalivibrio_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.302,
        "cell_length": 0.176,
        "doubling_h": null,
        "growth_tmp": 27.5,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": 4274636.25,
        "gc_content": 57.086,
        "coding_genes": 3532.333,
        "rRNA16S_genes": 2.0,
        "tRNA_genes": 50.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Chromatiales",
        "f__Sedimenticolaceae",
        "g__Thiolapillus",
        "s__Thiolapillus sp027030425"
    ],
    "_genome_taxon": [
        "Sedimenticola",
        "sp.",
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Chromatiales",
        "f__Sedimenticolaceae",
        "g__Thiolapillus",
        "s__Thiolapillus sp027030425",
        "Bacteria",
        "Pseudomonadota",
        "Gammaproteobacteria",
        "Chromatiales",
        "Sedimenticolaceae",
        "Thiolapillus",
        "Thiolapillus",
        "sp027030425"
    ],
    "_meo": [
        {
            "id": "MEO_0000031",
            "label": "hydrothermal vent"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}