{
    "type": "genome",
    "identifier": "GCA_026983685.1",
    "organism": "Aquificaceae bacterium",
    "title": "Aquificaceae bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "Portland State University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_026983685.1",
        "bioproject": "PRJNA821212",
        "biosample": "SAMN27357999",
        "wgs_master": "JALSTO000000000.1",
        "refseq_category": "na",
        "taxid": "2053503",
        "species_taxid": "2053503",
        "organism_name": "Aquificaceae bacterium",
        "infraspecific_name": "",
        "isolate": "356-308_metabat2_scaf2bin.111",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/12/19",
        "asm_name": "ASM2698368v1",
        "submitter": "Portland State University",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/983/685/GCA_026983685.1_ASM2698368v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-12-19",
    "dateModified": "2022-12-19",
    "datePublished": "2022-12-19",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Aquificaceae bacterium"
        ],
        "sample_taxid": [
            "2053503"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Atlantic Ocean: Mid Atlantic Ridge"
        ],
        "sample_host_location_id": [],
        "data_size": "0.420 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 86.57,
        "contamination": 0.46,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1478385",
        "Number of Sequences": "338",
        "Longest Sequences (bp)": "21275",
        "N50 (bp)": "5159",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "50.0",
        "Number of CDSs": "1337",
        "Average Protein Length": "260.8",
        "Coding Ratio (%)": "70.8",
        "Number of rRNAs": "0",
        "Number of tRNAs": "26",
        "Number of CRISPRs": "3"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Hydrogenivirga caldilitoris",
                "strain": "strain=DSM 16510",
                "accession": "GCA_003664005.1",
                "taxid": 246264,
                "species_taxid": 246264,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6411,
                "matched_fragments": 115,
                "total_fragments": 307,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 86.57,
            "contamination": 0.46,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_015492115.1",
                "gtdb_species": "s__Hydrogenivirga sp015492115",
                "ani": 78.6643,
                "matched_fragments": 165,
                "total_fragments": 307,
                "gtdb_taxonomy": "d__Bacteria;p__Aquificota;c__Aquificae;o__Aquificales;f__Aquificaceae;g__Hydrogenivirga",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.46",
                "min_intra_species_ani": "98.46",
                "mean_intra_species_af": "0.84",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_003664005.1",
                "gtdb_species": "s__Hydrogenivirga caldilitoris",
                "ani": 77.6411,
                "matched_fragments": 115,
                "total_fragments": 307,
                "gtdb_taxonomy": "d__Bacteria;p__Aquificota;c__Aquificae;o__Aquificales;f__Aquificaceae;g__Hydrogenivirga",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_013153495.1",
                "gtdb_species": "s__Hydrogenivirga sp013153495",
                "ani": 77.4323,
                "matched_fragments": 114,
                "total_fragments": 307,
                "gtdb_taxonomy": "d__Bacteria;p__Aquificota;c__Aquificae;o__Aquificales;f__Aquificaceae;g__Hydrogenivirga",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_015487535.1",
                "gtdb_species": "s__Hydrogenivirga sp015487535",
                "ani": 77.2918,
                "matched_fragments": 87,
                "total_fragments": 307,
                "gtdb_taxonomy": "d__Bacteria;p__Aquificota;c__Aquificae;o__Aquificales;f__Aquificaceae;g__Hydrogenivirga",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_015490215.1",
                "gtdb_species": "s__Hydrogenivirga sp015490215",
                "ani": 76.8163,
                "matched_fragments": 59,
                "total_fragments": 307,
                "gtdb_taxonomy": "d__Bacteria;p__Aquificota;c__Aquificae;o__Aquificales;f__Aquificaceae;g__Hydrogenivirga",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.49",
                "min_intra_species_ani": "98.49",
                "mean_intra_species_af": "0.73",
                "min_intra_species_af": "0.73",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_015487835.1",
                "gtdb_species": "s__Hydrogenivirga sp015487835",
                "ani": 76.6172,
                "matched_fragments": 56,
                "total_fragments": 307,
                "gtdb_taxonomy": "d__Bacteria;p__Aquificota;c__Aquificae;o__Aquificales;f__Aquificaceae;g__Hydrogenivirga",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_011375045.1",
                "gtdb_species": "s__Hydrogenivirga aeolica_A",
                "ani": 76.0149,
                "matched_fragments": 58,
                "total_fragments": 307,
                "gtdb_taxonomy": "d__Bacteria;p__Aquificota;c__Aquificae;o__Aquificales;f__Aquificaceae;g__Hydrogenivirga",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.75",
                "min_intra_species_ani": "95.63",
                "mean_intra_species_af": "0.80",
                "min_intra_species_af": "0.73",
                "num_clustered_genomes": 7,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.268,
        "cell_length": 0.295,
        "doubling_h": 0.044,
        "growth_tmp": 75.83,
        "optimum_tmp": 73.916,
        "optimum_ph": 6.716,
        "genome_size": 1548870.869,
        "gc_content": 46.05,
        "coding_genes": 1592.166,
        "rRNA16S_genes": 2.666,
        "tRNA_genes": 43.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.142,
        "aerobic_respiration": 0.857,
        "mesophilic_range_tmp": 0.0,
        "thermophilic_range_tmp": 1.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Aquificota",
        "c__Aquificae",
        "o__Aquificales",
        "f__Aquificaceae",
        "g__Hydrogenivirga",
        "s__Hydrogenivirga sp026983685"
    ],
    "_genome_taxon": [
        "Aquificaceae",
        "bacterium",
        "d__Bacteria",
        "p__Aquificota",
        "c__Aquificae",
        "o__Aquificales",
        "f__Aquificaceae",
        "g__Hydrogenivirga",
        "s__Hydrogenivirga sp026983685",
        "Bacteria",
        "Aquificota",
        "Aquificae",
        "Aquificales",
        "Aquificaceae",
        "Hydrogenivirga",
        "Hydrogenivirga",
        "sp026983685"
    ],
    "_meo": [
        {
            "id": "MEO_0000031",
            "label": "hydrothermal vent"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}