{ "type": "genome", "identifier": "GCA_026985655.1", "organism": "Campylobacteraceae bacterium", "title": "Campylobacteraceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Portland State University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_026985655.1", "bioproject": "PRJNA821212", "biosample": "SAMN27357908", "wgs_master": "JALSQB000000000.1", "refseq_category": "na", "taxid": "2268179", "species_taxid": "2268179", "organism_name": "Campylobacteraceae bacterium", "infraspecific_name": "", "isolate": "356-284_metabat2_scaf2bin.109", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/12/19", "asm_name": "ASM2698565v1", "submitter": "Portland State University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/985/655/GCA_026985655.1_ASM2698565v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-12-19", "dateModified": "2022-12-19", "datePublished": "2022-12-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Campylobacteraceae bacterium" ], "sample_taxid": [ "2268179" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Atlantic Ocean: Mid Atlantic Ridge" ], "sample_host_location_id": [], "data_size": "0.468 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 87.5, "contamination": 0.38, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1666061", "Number of Sequences": "245", "Longest Sequences (bp)": "40827", "N50 (bp)": "10366", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "35.1", "Number of CDSs": "1548", "Average Protein Length": "287.5", "Coding Ratio (%)": "80.2", "Number of rRNAs": "0", "Number of tRNAs": "40", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [], "cc_result": { "completeness": 87.5, "contamination": 0.38, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCA_902727995.1", "gtdb_species": "s__UBA1140 sp902727995", "ani": 79.6079, "matched_fragments": 211, "total_fragments": 432, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Sulfurovaceae;g__UBA1140", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_902727935.1", "gtdb_species": "s__UBA1140 sp902727935", "ani": 79.4417, "matched_fragments": 213, "total_fragments": 432, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Sulfurovaceae;g__UBA1140", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_902727905.1", "gtdb_species": "s__UBA1140 sp902727905", "ani": 79.4012, "matched_fragments": 161, "total_fragments": 432, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Sulfurovaceae;g__UBA1140", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_902727895.1", "gtdb_species": "s__UBA1140 sp902727895", "ani": 79.1912, "matched_fragments": 215, "total_fragments": 432, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Sulfurovaceae;g__UBA1140", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_902727915.1", "gtdb_species": "s__UBA1140 sp902727915", "ani": 79.0168, "matched_fragments": 212, "total_fragments": 432, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Sulfurovaceae;g__UBA1140", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003978395.1", "gtdb_species": "s__UBA1140 sp003978395", "ani": 78.1653, 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"coccobacillus_cell_shape": 0.027, "vibrio_cell_shape": 0.138, "spiral_cell_shape": 0.388 }, "_gtdb_taxon": [ "d__Bacteria", "p__Campylobacterota", "c__Campylobacteria", "o__Campylobacterales", "f__Sulfurovaceae", "g__UBA1140", "s__UBA1140 sp026985655" ], "_genome_taxon": [ "Campylobacteraceae", "bacterium", "d__Bacteria", "p__Campylobacterota", "c__Campylobacteria", "o__Campylobacterales", "f__Sulfurovaceae", "g__UBA1140", "s__UBA1140 sp026985655", "Bacteria", "Campylobacterota", "Campylobacteria", "Campylobacterales", "Sulfurovaceae", "UBA1140", "UBA1140", "sp026985655" ], "_meo": [ { "id": "MEO_0000031", "label": "hydrothermal vent" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }