{ "type": "genome", "identifier": "GCA_026988015.1", "organism": "Desulfobulbaceae bacterium", "title": "Desulfobulbaceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Portland State University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_026988015.1", "bioproject": "PRJNA821212", "biosample": "SAMN27357803", "wgs_master": "JALSMA000000000.1", "refseq_category": "na", "taxid": "2053307", "species_taxid": "2053307", "organism_name": "Desulfobulbaceae bacterium", "infraspecific_name": "", "isolate": "355-202_metabat2_scaf2bin.066", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/12/19", "asm_name": "ASM2698801v1", "submitter": "Portland State University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/988/015/GCA_026988015.1_ASM2698801v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-12-19", "dateModified": "2022-12-19", "datePublished": "2022-12-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Desulfobulbaceae bacterium" ], "sample_taxid": [ "2053307" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Atlantic Ocean: Mid Atlantic Ridge" ], "sample_host_location_id": [], "data_size": "0.906 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3148330", "Number of Sequences": "91", "Longest Sequences (bp)": "117767", "N50 (bp)": "47354", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "46.0", "Number of CDSs": "2711", "Average Protein Length": "336.4", "Coding Ratio (%)": "86.9", "Number of rRNAs": "0", "Number of tRNAs": "40", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Desulfocapsa sulfexigens", "strain": "strain=DSM 10523", "accession": "GCA_000341395.1", "taxid": 65555, "species_taxid": 65555, "relation_to_type": "type", "validated": true, "ani": 77.7421, "matched_fragments": 221, "total_fragments": 1006, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_015662865.1", "gtdb_species": "s__Desulfocapsa sulfexigens_B", "ani": 77.9391, "matched_fragments": 205, "total_fragments": 1006, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobulbia;o__Desulfobulbales;f__Desulfocapsaceae;g__Desulfocapsa", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016765495.1", "gtdb_species": "s__Desulfocapsa sp016765495", "ani": 77.8089, "matched_fragments": 188, "total_fragments": 1006, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobulbia;o__Desulfobulbales;f__Desulfocapsaceae;g__Desulfocapsa", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000341395.1", "gtdb_species": "s__Desulfocapsa sulfexigens", "ani": 77.7288, "matched_fragments": 222, "total_fragments": 1006, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobulbia;o__Desulfobulbales;f__Desulfocapsaceae;g__Desulfocapsa", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_015661935.1", "gtdb_species": "s__Desulfocapsa sulfexigens_A", "ani": 77.4962, "matched_fragments": 125, "total_fragments": 1006, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobulbia;o__Desulfobulbales;f__Desulfocapsaceae;g__Desulfocapsa", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_018820855.1", "gtdb_species": "s__Desulfocapsa sp018820855", "ani": 76.8661, "matched_fragments": 135, "total_fragments": 1006, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobulbia;o__Desulfobulbales;f__Desulfocapsaceae;g__Desulfocapsa", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.68", "min_intra_species_ani": "99.21", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.95", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_903887485.1", "gtdb_species": "s__UBA2270 sp903887485", "ani": 75.8673, "matched_fragments": 51, "total_fragments": 1006, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobulbia;o__Desulfobulbales;f__Desulfocapsaceae;g__UBA2270", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.90", "min_intra_species_ani": "99.87", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.96", "num_clustered_genomes": 3, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.119, "cell_length": 0.261, "doubling_h": 1.513, "growth_tmp": 26.435, "optimum_tmp": 29.318, "optimum_ph": 7.514, "genome_size": 4185931.992, "gc_content": 50.116, "coding_genes": 3316.888, "rRNA16S_genes": 4.0, "tRNA_genes": 53.0, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.7, "range_salinity": null, "facultative_respiration": 0.071, "anaerobic_respiration": 0.928, "aerobic_respiration": 0.0, "mesophilic_range_tmp": 0.6, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.4, "bacillus_cell_shape": 0.714, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.214, "coccobacillus_cell_shape": 0.071, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Desulfobacterota", "c__Desulfobulbia", "o__Desulfobulbales", "f__Desulfocapsaceae", "g__Desulfocapsa", "s__Desulfocapsa sp026988015" ], "_genome_taxon": [ "Desulfobulbaceae", "bacterium", "d__Bacteria", "p__Desulfobacterota", "c__Desulfobulbia", "o__Desulfobulbales", "f__Desulfocapsaceae", "g__Desulfocapsa", "s__Desulfocapsa sp026988015", "Bacteria", "Desulfobacterota", "Desulfobulbia", "Desulfobulbales", "Desulfocapsaceae", "Desulfocapsa", "Desulfocapsa", "sp026988015" ], "_meo": [ { "id": "MEO_0000031", "label": "hydrothermal vent" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }