{
    "type": "genome",
    "identifier": "GCA_026989475.1",
    "organism": "Thermaceae bacterium",
    "title": "Thermaceae bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "Portland State University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_026989475.1",
        "bioproject": "PRJNA821212",
        "biosample": "SAMN27357731",
        "wgs_master": "JALSJG000000000.1",
        "refseq_category": "na",
        "taxid": "2614257",
        "species_taxid": "2614257",
        "organism_name": "Thermaceae bacterium",
        "infraspecific_name": "",
        "isolate": "354-166_metabat2_scaf2bin.080",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/12/19",
        "asm_name": "ASM2698947v1",
        "submitter": "Portland State University",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/989/475/GCA_026989475.1_ASM2698947v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-12-19",
    "dateModified": "2022-12-19",
    "datePublished": "2022-12-19",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Thermaceae bacterium"
        ],
        "sample_taxid": [
            "2614257"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Atlantic Ocean: Mid Atlantic Ridge"
        ],
        "sample_host_location_id": [],
        "data_size": "0.397 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 81.73,
        "contamination": 2.6,
        "strain_heterogeneity": 66.67,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1448635",
        "Number of Sequences": "276",
        "Longest Sequences (bp)": "26755",
        "N50 (bp)": "7138",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "68.3",
        "Number of CDSs": "1320",
        "Average Protein Length": "274.6",
        "Coding Ratio (%)": "75.1",
        "Number of rRNAs": "0",
        "Number of tRNAs": "39",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Oceanithermus desulfurans",
                "strain": "strain=NBRC 100063",
                "accession": "GCA_007991015.1",
                "taxid": 227924,
                "species_taxid": 227924,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.5838,
                "matched_fragments": 152,
                "total_fragments": 325,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Oceanithermus desulfurans",
                "strain": "strain=DSM 15757",
                "accession": "GCA_014201675.1",
                "taxid": 227924,
                "species_taxid": 227924,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.4876,
                "matched_fragments": 158,
                "total_fragments": 325,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Oceanithermus profundus",
                "strain": "strain=DSM 14977",
                "accession": "GCA_000183745.1",
                "taxid": 187137,
                "species_taxid": 187137,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.2617,
                "matched_fragments": 169,
                "total_fragments": 325,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thermus thermophilus",
                "strain": "strain=HB8",
                "accession": "GCA_000091545.1",
                "taxid": 274,
                "species_taxid": 274,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.5333,
                "matched_fragments": 118,
                "total_fragments": 325,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thermus thermophilus",
                "strain": "strain=JCM10941",
                "accession": "GCA_019973715.1",
                "taxid": 274,
                "species_taxid": 274,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4826,
                "matched_fragments": 119,
                "total_fragments": 325,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thermus parvatiensis",
                "strain": "strain=RL",
                "accession": "GCA_000252835.2",
                "taxid": 456163,
                "species_taxid": 456163,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.2665,
                "matched_fragments": 101,
                "total_fragments": 325,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Marinithermus hydrothermalis",
                "strain": "strain=DSM 14884",
                "accession": "GCA_000195335.1",
                "taxid": 186192,
                "species_taxid": 186192,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.2552,
                "matched_fragments": 92,
                "total_fragments": 325,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Calidithermus chliarophilus",
                "strain": "strain=DSM 9957",
                "accession": "GCA_000430045.1",
                "taxid": 52023,
                "species_taxid": 52023,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.0888,
                "matched_fragments": 115,
                "total_fragments": 325,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 81.73,
            "contamination": 2.6,
            "strain_heterogeneity": 66.67
        },
        "gtdb_result": [
            {
                "accession": "GCA_015490435.1",
                "gtdb_species": "s__WFXV01 sp015490435",
                "ani": 90.3234,
                "matched_fragments": 260,
                "total_fragments": 325,
                "gtdb_taxonomy": "d__Bacteria;p__Deinococcota;c__Deinococci;o__Deinococcales;f__Marinithermaceae;g__WFXV01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_015488545.1",
                "gtdb_species": "s__WFXV01 sp015488545",
                "ani": 81.0385,
                "matched_fragments": 220,
                "total_fragments": 325,
                "gtdb_taxonomy": "d__Bacteria;p__Deinococcota;c__Deinococci;o__Deinococcales;f__Marinithermaceae;g__WFXV01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_015519965.1",
                "gtdb_species": "s__WFXV01 sp015519965",
                "ani": 78.6814,
                "matched_fragments": 130,
                "total_fragments": 325,
                "gtdb_taxonomy": "d__Bacteria;p__Deinococcota;c__Deinococci;o__Deinococcales;f__Marinithermaceae;g__WFXV01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.28",
                "min_intra_species_ani": "99.28",
                "mean_intra_species_af": "0.73",
                "min_intra_species_af": "0.73",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_014201675.1",
                "gtdb_species": "s__Oceanithermus desulfurans",
                "ani": 78.4876,
                "matched_fragments": 158,
                "total_fragments": 325,
                "gtdb_taxonomy": "d__Bacteria;p__Deinococcota;c__Deinococci;o__Deinococcales;f__Marinithermaceae;g__Oceanithermus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.68",
                "min_intra_species_ani": "96.67",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCA_015494055.1",
                "gtdb_species": "s__Oceanithermus sp015494055",
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                "matched_fragments": 134,
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                "gtdb_taxonomy": "d__Bacteria;p__Deinococcota;c__Deinococci;o__Deinococcales;f__Marinithermaceae;g__Oceanithermus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.03",
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                "mean_intra_species_af": "0.84",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000183745.1",
                "gtdb_species": "s__Oceanithermus profundus",
                "ani": 78.2821,
                "matched_fragments": 168,
                "total_fragments": 325,
                "gtdb_taxonomy": "d__Bacteria;p__Deinococcota;c__Deinococci;o__Deinococcales;f__Marinithermaceae;g__Oceanithermus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCA_011330655.1",
                "gtdb_species": "s__Oceanithermus profundus_A",
                "ani": 78.0961,
                "matched_fragments": 129,
                "total_fragments": 325,
                "gtdb_taxonomy": "d__Bacteria;p__Deinococcota;c__Deinococci;o__Deinococcales;f__Marinithermaceae;g__Oceanithermus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.315,
        "cell_length": 0.327,
        "doubling_h": 0.024,
        "growth_tmp": 60.136,
        "optimum_tmp": 62.263,
        "optimum_ph": 7.566,
        "genome_size": 2655042.189,
        "gc_content": 66.521,
        "coding_genes": 2446.172,
        "rRNA16S_genes": 2.0,
        "tRNA_genes": 48.38,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": 0.5,
        "facultative_respiration": 0.19,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 0.809,
        "mesophilic_range_tmp": 0.0,
        "thermophilic_range_tmp": 1.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.956,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.043,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
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        "p__Deinococcota",
        "c__Deinococci",
        "o__Deinococcales",
        "f__Marinithermaceae",
        "g__WFXV01",
        "s__WFXV01 sp026989475"
    ],
    "_genome_taxon": [
        "Thermaceae",
        "bacterium",
        "d__Bacteria",
        "p__Deinococcota",
        "c__Deinococci",
        "o__Deinococcales",
        "f__Marinithermaceae",
        "g__WFXV01",
        "s__WFXV01 sp026989475",
        "Bacteria",
        "Deinococcota",
        "Deinococci",
        "Deinococcales",
        "Marinithermaceae",
        "WFXV01",
        "WFXV01",
        "sp026989475"
    ],
    "_meo": [
        {
            "id": "MEO_0000031",
            "label": "hydrothermal vent"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}