{ "type": "genome", "identifier": "GCA_026989495.1", "organism": "Gammaproteobacteria bacterium", "title": "Gammaproteobacteria bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Portland State University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_026989495.1", "bioproject": "PRJNA821212", "biosample": "SAMN27357729", "wgs_master": "JALSJE000000000.1", "refseq_category": "na", "taxid": "1913989", "species_taxid": "1913989", "organism_name": "Gammaproteobacteria bacterium", "infraspecific_name": "", "isolate": "354-166_metabat2_scaf2bin.072", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/12/19", "asm_name": "ASM2698949v1", "submitter": "Portland State University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/989/495/GCA_026989495.1_ASM2698949v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-12-19", "dateModified": "2022-12-19", "datePublished": "2022-12-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Gammaproteobacteria bacterium" ], "sample_taxid": [ "1913989" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Atlantic Ocean: Mid Atlantic Ridge" ], "sample_host_location_id": [], "data_size": "0.679 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 94.99, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2541294", "Number of Sequences": "143", "Longest Sequences (bp)": "91382", "N50 (bp)": "26064", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "73.1", "Number of CDSs": "2404", "Average Protein Length": "307.4", "Coding Ratio (%)": "87.2", "Number of rRNAs": "1", "Number of tRNAs": "46", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Inmirania thermothiophila", "strain": "strain=DSM 100275", "accession": "GCA_003751635.1", "taxid": 1750597, "species_taxid": 1750597, "relation_to_type": "type", "validated": true, "ani": 79.4302, "matched_fragments": 409, "total_fragments": 774, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thioalkalivibrio sulfidiphilus", "strain": "strain=HL-EbGR7", "accession": "GCA_000021985.1", "taxid": 1033854, "species_taxid": 1033854, "relation_to_type": "type", "validated": true, "ani": 78.4044, "matched_fragments": 271, 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"status": "below_threshold" }, { "organism_name": "Thiohalospira halophila", "strain": "strain=HL 3", "accession": "GCA_900112605.1", "taxid": 381300, "species_taxid": 381300, "relation_to_type": "type", "validated": true, "ani": 77.5668, "matched_fragments": 230, "total_fragments": 774, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marichromatium gracile", "strain": "strain=DSM 203", "accession": "GCA_004343155.1", "taxid": 1048, "species_taxid": 1048, "relation_to_type": "type", "validated": true, "ani": 77.4662, "matched_fragments": 250, "total_fragments": 774, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfurivermis fontis", "strain": "strain=JG42", "accession": "GCA_004001245.1", "taxid": 1972068, "species_taxid": 1972068, "relation_to_type": "type", "validated": true, "ani": 77.4087, "matched_fragments": 207, "total_fragments": 774, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thioalkalivibrio thiocyanodenitrificans", "strain": "strain=ARhD 1", "accession": "GCA_000378965.1", "taxid": 243063, "species_taxid": 243063, "relation_to_type": "type", "validated": true, "ani": 77.3686, "matched_fragments": 196, "total_fragments": 774, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfurifustis variabilis", "strain": "strain=skN76", "accession": "GCA_002355415.1", "taxid": 1675686, "species_taxid": 1675686, "relation_to_type": "type", "validated": true, "ani": 77.0914, "matched_fragments": 191, "total_fragments": 774, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Plasticicumulans lactativorans", "strain": "strain=DSM 25287", "accession": "GCA_004341245.1", "taxid": 1133106, "species_taxid": 1133106, "relation_to_type": "type", "validated": true, "ani": 77.063, "matched_fragments": 279, "total_fragments": 774, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas lumbrici", "strain": "strain=1.1416", "accession": "GCA_006476065.1", "taxid": 2559601, "species_taxid": 2559601, "relation_to_type": "type", "validated": true, "ani": 77.0084, "matched_fragments": 161, "total_fragments": 774, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thiohalocapsa halophila", "strain": "strain=DSM 6210", "accession": "GCA_016583825.1", "taxid": 69359, "species_taxid": 69359, "relation_to_type": "type", "validated": true, "ani": 77.0015, "matched_fragments": 250, "total_fragments": 774, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas sulfidoxydans", "strain": "strain=MCCC 1A11059", "accession": "GCA_017868775.1", "taxid": 2733484, "species_taxid": 2733484, "relation_to_type": "type", "validated": true, "ani": 76.9435, "matched_fragments": 174, "total_fragments": 774, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thioalkalivibrio paradoxus", "strain": "strain=ARh 1", "accession": "GCA_000227685.3", "taxid": 108010, 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