{ "type": "genome", "identifier": "GCA_026989935.1", "organism": "Polyangiaceae bacterium", "title": "Polyangiaceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Portland State University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_026989935.1", "bioproject": "PRJNA821212", "biosample": "SAMN27357712", "wgs_master": "JALSIN000000000.1", "refseq_category": "na", "taxid": "2268199", "species_taxid": "2268199", "organism_name": "Polyangiaceae bacterium", "infraspecific_name": "", "isolate": "354-166_metabat2_scaf2bin.035", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/12/19", "asm_name": "ASM2698993v1", "submitter": "Portland State University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/989/935/GCA_026989935.1_ASM2698993v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-12-19", "dateModified": "2022-12-19", "datePublished": "2022-12-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Polyangiaceae bacterium" ], "sample_taxid": [ "2268199" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Atlantic Ocean: Mid Atlantic Ridge" ], "sample_host_location_id": [], "data_size": "1.208 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 2.46, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4474232", "Number of Sequences": "471", "Longest Sequences (bp)": "56334", "N50 (bp)": "13984", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "72.1", "Number of CDSs": "3376", "Average Protein Length": "345.5", "Coding Ratio (%)": "78.2", "Number of rRNAs": "3", "Number of tRNAs": "58", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Plesiocystis pacifica", "strain": "strain=SIR-1", "accession": "GCA_000170895.1", "taxid": 191768, "species_taxid": 191768, "relation_to_type": "type", "validated": true, "ani": 75.9281, "matched_fragments": 356, "total_fragments": 1241, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nannocystis exedens", "strain": "strain=DSM 71", "accession": "GCA_002343915.1", "taxid": 54, "species_taxid": 54, "relation_to_type": "type", "validated": true, "ani": 75.7664, "matched_fragments": 432, "total_fragments": 1241, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nannocystis exedens", "strain": "strain=ATCC 25963", "accession": "GCA_900112715.1", "taxid": 54, "species_taxid": 54, "relation_to_type": "type", "validated": true, "ani": 75.6548, "matched_fragments": 433, "total_fragments": 1241, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonibacter pamelaeae", "strain": "strain=7-10-1-bT", "accession": "GCA_000210055.1", "taxid": 471189, "species_taxid": 471189, "relation_to_type": "type", "validated": true, "ani": 75.4147, "matched_fragments": 50, "total_fragments": 1241, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Meinhardsimonia xiamenensis", "strain": "strain=CGMCC 1.10789", "accession": "GCA_900102905.1", "taxid": 990712, "species_taxid": 990712, "relation_to_type": "type", "validated": true, "ani": 75.4115, "matched_fragments": 52, "total_fragments": 1241, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Meinhardsimonia xiamenensis", "strain": "strain=DSM 24422", "accession": "GCA_003001835.1", "taxid": 990712, "species_taxid": 990712, "relation_to_type": "type", "validated": true, "ani": 75.3956, "matched_fragments": 53, "total_fragments": 1241, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dissulfurirhabdus thermomarina", "strain": "strain=DSM 100025", "accession": "GCA_010499435.1", "taxid": 1765737, "species_taxid": 1765737, "relation_to_type": "type", "validated": true, "ani": 75.2505, "matched_fragments": 69, "total_fragments": 1241, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dissulfurirhabdus thermomarina", "strain": "strain=SH388", "accession": "GCA_012979235.1", "taxid": 1765737, "species_taxid": 1765737, "relation_to_type": "type", "validated": true, "ani": 75.1949, "matched_fragments": 82, "total_fragments": 1241, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stigmatella hybrida", "strain": "strain=DSM 14722", "accession": "GCA_020103775.1", "taxid": 394097, "species_taxid": 394097, "relation_to_type": "type", "validated": true, "ani": 75.0979, "matched_fragments": 128, "total_fragments": 1241, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Haliangium ochraceum", "strain": "strain=DSM 14365", "accession": "GCA_000024805.1", "taxid": 80816, "species_taxid": 80816, "relation_to_type": "type", "validated": true, "ani": 75.0327, "matched_fragments": 229, "total_fragments": 1241, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Anaeromyxobacter dehalogenans", "strain": "strain=2CP-1", "accession": "GCA_000022145.1", "taxid": 161493, "species_taxid": 161493, "relation_to_type": "type", "validated": true, "ani": 75.0275, "matched_fragments": 243, "total_fragments": 1241, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas aquatica", "strain": "strain=RIB1-20", "accession": "GCA_022662575.1", "taxid": 450364, "species_taxid": 450364, "relation_to_type": "type", "validated": true, "ani": 74.9588, "matched_fragments": 104, "total_fragments": 1241, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas psychrotolerans", "strain": "strain=DSM 15758", "accession": "GCA_012985915.1", "taxid": 237610, "species_taxid": 237610, "relation_to_type": "suspected-type", "validated": true, "ani": 74.9581, "matched_fragments": 66, "total_fragments": 1241, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfurifustis variabilis", "strain": "strain=skN76", "accession": "GCA_002355415.1", "taxid": 1675686, "species_taxid": 1675686, "relation_to_type": "type", "validated": true, "ani": 74.9349, "matched_fragments": 79, "total_fragments": 1241, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oceanicella actignis", "strain": "strain=DSM 22673", "accession": "GCA_008124525.1", "taxid": 1189325, "species_taxid": 1189325, "relation_to_type": "type", "validated": true, "ani": 74.925, "matched_fragments": 150, "total_fragments": 1241, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thalassobaculum fulvum", "strain": "strain=KCTC 42651", "accession": "GCA_014652915.1", "taxid": 1633335, "species_taxid": 1633335, "relation_to_type": "type", "validated": true, "ani": 74.907, "matched_fragments": 152, "total_fragments": 1241, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Plasticicumulans lactativorans", "strain": "strain=DSM 25287", "accession": "GCA_004341245.1", "taxid": 1133106, "species_taxid": 1133106, "relation_to_type": "type", "validated": true, "ani": 74.9041, "matched_fragments": 141, "total_fragments": 1241, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas telluris", "strain": "strain=CPCC 204705", "accession": "GCA_004886325.1", "taxid": 2306636, "species_taxid": 2306636, "relation_to_type": "type", "validated": true, "ani": 74.8534, "matched_fragments": 158, "total_fragments": 1241, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arsenicicoccus bolidensis", "strain": "strain=DSM 15745", "accession": "GCA_000426385.1", "taxid": 229480, "species_taxid": 229480, "relation_to_type": "type", "validated": true, "ani": 74.8484, "matched_fragments": 99, "total_fragments": 1241, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Deinococcus pimensis", "strain": "strain=DSM 21231", "accession": "GCA_000519345.1", "taxid": 309888, "species_taxid": 309888, "relation_to_type": "type", "validated": true, "ani": 74.8195, "matched_fragments": 78, "total_fragments": 1241, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas psychrotolerans", "strain": "strain=DSM 15758", "accession": "GCA_900102665.1", "taxid": 237610, "species_taxid": 237610, "relation_to_type": "suspected-type", "validated": true, "ani": 74.8084, "matched_fragments": 65, "total_fragments": 1241, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salinisphaera halophila", "strain": "strain=YIM 95161", "accession": "GCA_003732545.1", "taxid": 1304158, "species_taxid": 1304158, "relation_to_type": "type", "validated": true, "ani": 74.8062, "matched_fragments": 74, "total_fragments": 1241, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura violacea", "strain": "strain=LCR2-06", "accession": "GCA_017573465.1", "taxid": 2819934, "species_taxid": 2819934, "relation_to_type": "type", "validated": true, "ani": 74.7451, "matched_fragments": 265, "total_fragments": 1241, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Motilibacter deserti", "strain": "strain=E257", "accession": "GCA_011250635.1", "taxid": 2714956, "species_taxid": 2714956, "relation_to_type": "type", "validated": true, "ani": 74.7238, "matched_fragments": 142, "total_fragments": 1241, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces phaeochromogenes", "strain": "strain=NRRL B-1248", "accession": "GCA_001418655.1", "taxid": 1923, "species_taxid": 1923, "relation_to_type": "type", "validated": true, "ani": 74.7075, "matched_fragments": 159, "total_fragments": 1241, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 2.46, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCA_003696955.1", "gtdb_species": "s__J032 sp003696955", "ani": 79.4607, "matched_fragments": 683, "total_fragments": 1241, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Polyangia;o__Nannocystales;f__Nannocystaceae;g__J032", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016709225.1", "gtdb_species": "s__Ga0077550 sp016709225", "ani": 76.1473, "matched_fragments": 332, "total_fragments": 1241, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Polyangia;o__Nannocystales;f__Nannocystaceae;g__Ga0077550", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.66", "min_intra_species_ani": "99.17", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.94", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_001464385.1", "gtdb_species": "s__Ga0077550 sp001464385", "ani": 75.9573, "matched_fragments": 364, "total_fragments": 1241, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Polyangia;o__Nannocystales;f__Nannocystaceae;g__Ga0077550", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_013812955.1", "gtdb_species": "s__Nannocystis sp013812955", "ani": 75.9321, "matched_fragments": 220, "total_fragments": 1241, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Polyangia;o__Nannocystales;f__Nannocystaceae;g__Nannocystis", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000170895.1", "gtdb_species": "s__Plesiocystis pacifica", "ani": 75.9319, "matched_fragments": 355, "total_fragments": 1241, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Polyangia;o__Nannocystales;f__Nannocystaceae;g__Plesiocystis", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000737335.2", "gtdb_species": "s__Enhygromyxa salina_C", "ani": 75.8797, "matched_fragments": 208, "total_fragments": 1241, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Polyangia;o__Nannocystales;f__Nannocystaceae;g__Enhygromyxa", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002994615.1", "gtdb_species": "s__Enhygromyxa salina_A", "ani": 75.8149, "matched_fragments": 279, "total_fragments": 1241, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Polyangia;o__Nannocystales;f__Nannocystaceae;g__Enhygromyxa", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002343915.1", "gtdb_species": "s__Nannocystis exedens", "ani": 75.74, "matched_fragments": 445, "total_fragments": 1241, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Polyangia;o__Nannocystales;f__Nannocystaceae;g__Nannocystis", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.98", "min_intra_species_ani": "99.98", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_016714285.1", "gtdb_species": "s__Nannocystis sp016714285", "ani": 75.7095, "matched_fragments": 334, "total_fragments": 1241, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Polyangia;o__Nannocystales;f__Nannocystaceae;g__Nannocystis", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.25", "min_intra_species_ani": "99.25", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.96", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_016793465.1", "gtdb_species": "s__Nannocystis sp016793465", "ani": 75.6385, "matched_fragments": 403, "total_fragments": 1241, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Polyangia;o__Nannocystales;f__Nannocystaceae;g__Nannocystis", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_902826865.1", "gtdb_species": "s__Ga0077550 sp902826865", "ani": 75.6007, "matched_fragments": 164, "total_fragments": 1241, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Polyangia;o__Nannocystales;f__Nannocystaceae;g__Ga0077550", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016717005.1", "gtdb_species": "s__UBA2376 sp016717005", "ani": 75.0855, "matched_fragments": 349, "total_fragments": 1241, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Polyangia;o__Haliangiales;f__Haliangiaceae;g__UBA2376", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016201575.1", "gtdb_species": "s__AR9 sp016201575", "ani": 74.8836, "matched_fragments": 59, "total_fragments": 1241, "gtdb_taxonomy": "d__Bacteria;p__Methylomirabilota;c__Methylomirabilia;o__Rokubacteriales;f__CSP1-6;g__AR9", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_018241895.1", "gtdb_species": "s__Rubrivivax sp018241895", "ani": 74.7772, "matched_fragments": 124, "total_fragments": 1241, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Rubrivivax", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_001830245.1", "gtdb_species": "s__Lysobacter sp001830245", "ani": 74.7383, "matched_fragments": 65, "total_fragments": 1241, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Lysobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.71", "min_intra_species_ani": "99.71", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.066, "cell_length": 0.522, "doubling_h": 0.778, "growth_tmp": 29.384, "optimum_tmp": 28.0, "optimum_ph": 9.5, "genome_size": 8311295.744, "gc_content": 70.22, "coding_genes": 8988.25, "rRNA16S_genes": 3.5, "tRNA_genes": 71.375, "gram_stain": 0.0, "sporulation": 0.5, "motility": 0.5, "range_salinity": 0.0, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Myxococcota", "c__Polyangia", "o__Nannocystales", "f__Nannocystaceae", "g__J032", "s__J032 sp026989935" ], "_genome_taxon": [ "Polyangiaceae", "bacterium", "d__Bacteria", "p__Myxococcota", "c__Polyangia", "o__Nannocystales", "f__Nannocystaceae", "g__J032", "s__J032 sp026989935", "Bacteria", "Myxococcota", "Polyangia", "Nannocystales", "Nannocystaceae", "J032", "J032", "sp026989935" ], "_meo": [ { "id": "MEO_0000031", "label": "hydrothermal vent" } ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }