{
    "type": "genome",
    "identifier": "GCA_026993405.1",
    "organism": "Calditrichia bacterium",
    "title": "Calditrichia bacterium",
    "description": "derived from metagenome; fragmented assembly; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "Portland State University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_026993405.1",
        "bioproject": "PRJNA821212",
        "biosample": "SAMN27360740",
        "wgs_master": "JALWTW000000000.1",
        "refseq_category": "na",
        "taxid": "2268178",
        "species_taxid": "2268178",
        "organism_name": "Calditrichia bacterium",
        "infraspecific_name": "",
        "isolate": "M2_metabat2_scaf2bin.223",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/12/19",
        "asm_name": "ASM2699340v1",
        "submitter": "Portland State University",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/993/405/GCA_026993405.1_ASM2699340v1",
        "excluded_from_refseq": "derived from metagenome; fragmented assembly; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-12-19",
    "dateModified": "2022-12-19",
    "datePublished": "2022-12-19",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Calditrichia bacterium"
        ],
        "sample_taxid": [
            "2268178"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Pacific Ocean: Lau Basin"
        ],
        "sample_host_location_id": [],
        "data_size": "0.643 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 84.72,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2209321",
        "Number of Sequences": "560",
        "Longest Sequences (bp)": "15310",
        "N50 (bp)": "4548",
        "Gap Ratio (%)": "0.002263",
        "GCcontent (%)": "50.0",
        "Number of CDSs": "1397",
        "Average Protein Length": "310.2",
        "Coding Ratio (%)": "58.9",
        "Number of rRNAs": "0",
        "Number of tRNAs": "26",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [],
        "cc_result": {
            "completeness": 84.72,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_015493745.1",
                "gtdb_species": "s__J004 sp011051485",
                "ani": 84.2239,
                "matched_fragments": 351,
                "total_fragments": 420,
                "gtdb_taxonomy": "d__Bacteria;p__Calditrichota;c__Calditrichia;o__Calditrichales;f__J004;g__J004",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.79",
                "min_intra_species_ani": "98.79",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_003696775.1",
                "gtdb_species": "s__J004 sp003696775",
                "ani": 77.3115,
                "matched_fragments": 117,
                "total_fragments": 420,
                "gtdb_taxonomy": "d__Bacteria;p__Calditrichota;c__Calditrichia;o__Calditrichales;f__J004;g__J004",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Calditrichota",
        "c__Calditrichia",
        "o__Calditrichales",
        "f__J004",
        "g__J004",
        "s__J004 sp026991535"
    ],
    "_genome_taxon": [
        "Calditrichia",
        "bacterium",
        "d__Bacteria",
        "p__Calditrichota",
        "c__Calditrichia",
        "o__Calditrichales",
        "f__J004",
        "g__J004",
        "s__J004 sp026991535",
        "Bacteria",
        "Calditrichota",
        "Calditrichia",
        "Calditrichales",
        "J004",
        "J004",
        "J004",
        "sp026991535"
    ],
    "_meo": [
        {
            "id": "MEO_0000031",
            "label": "hydrothermal vent"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}