{ "type": "genome", "identifier": "GCA_027008655.1", "organism": "Methylothermaceae bacterium", "title": "Methylothermaceae bacterium", "description": "derived from metagenome; fragmented assembly; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Portland State University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_027008655.1", "bioproject": "PRJNA821212", "biosample": "SAMN27359899", "wgs_master": "JALVED000000000.1", "refseq_category": "na", "taxid": "2268196", "species_taxid": "2268196", "organism_name": "Methylothermaceae bacterium", "infraspecific_name": "", "isolate": "134-614_metabat2_scaf2bin.086", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/12/19", "asm_name": "ASM2700865v1", "submitter": "Portland State University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/027/008/655/GCA_027008655.1_ASM2700865v1", "excluded_from_refseq": "derived from metagenome; fragmented assembly; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-12-19", "dateModified": "2022-12-19", "datePublished": "2022-12-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Methylothermaceae bacterium" ], "sample_taxid": [ "2268196" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Pacific Ocean: Lau Basin" ], "sample_host_location_id": [], "data_size": "0.488 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 69.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1733142", "Number of Sequences": "598", "Longest Sequences (bp)": "11488", "N50 (bp)": "3161", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "65.3", "Number of CDSs": "1242", "Average Protein Length": "254.7", "Coding Ratio (%)": "54.8", "Number of rRNAs": "0", "Number of tRNAs": "23", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Methylohalobius crimeensis", "strain": "strain=10Ki", "accession": "GCA_000421465.1", "taxid": 244365, "species_taxid": 244365, "relation_to_type": "type", "validated": true, "ani": 77.8213, "matched_fragments": 85, "total_fragments": 236, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thiohalobacter thiocyanaticus", "strain": "strain=Hrh1", "accession": "GCA_003932505.1", "taxid": 585455, "species_taxid": 585455, "relation_to_type": "type", "validated": true, "ani": 77.0823, "matched_fragments": 51, 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"below_threshold" }, { "organism_name": "Pseudomonas citronellolis", "strain": "strain=LMG 18378", "accession": "GCA_900112375.1", "taxid": 53408, "species_taxid": 53408, "relation_to_type": "type", "validated": true, "ani": 76.3342, "matched_fragments": 57, "total_fragments": 236, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Plasticicumulans lactativorans", "strain": "strain=DSM 25287", "accession": "GCA_004341245.1", "taxid": 1133106, "species_taxid": 1133106, "relation_to_type": "type", "validated": true, "ani": 76.3145, "matched_fragments": 50, "total_fragments": 236, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 69.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000421465.1", "gtdb_species": "s__Methylohalobius crimeensis", "ani": 77.8213, "matched_fragments": 85, "total_fragments": 236, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Methylococcales;f__Methylothermaceae;g__Methylohalobius", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.22", "min_intra_species_ani": "95.22", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.89", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_016925495.1", "gtdb_species": "s__EFPC2 sp016925495", "ani": 77.1647, "matched_fragments": 53, "total_fragments": 236, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Methylococcales;f__Methylococcaceae;g__EFPC2", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_011051715.1", "gtdb_species": "s__HyVt-443 sp011051715", "ani": 77.0808, "matched_fragments": 57, "total_fragments": 236, "gtdb_taxonomy": 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