{ "type": "genome", "identifier": "GCA_027081195.1", "organism": "Desulfobulbaceae bacterium", "title": "Desulfobulbaceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Portland State University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_027081195.1", "bioproject": "PRJNA821212", "biosample": "SAMN27360509", "wgs_master": "JALWKZ000000000.1", "refseq_category": "na", "taxid": "2053307", "species_taxid": "2053307", "organism_name": "Desulfobulbaceae bacterium", "infraspecific_name": "", "isolate": "M17_metabat2_scaf2bin.026", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/12/19", "asm_name": "ASM2708119v1", "submitter": "Portland State University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/027/081/195/GCA_027081195.1_ASM2708119v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-12-19", "dateModified": "2022-12-19", "datePublished": "2022-12-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Desulfobulbaceae bacterium" ], "sample_taxid": [ "2053307" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Pacific Ocean: Lau Basin" ], "sample_host_location_id": [], "data_size": "0.900 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 98.86, "contamination": 1.5, "strain_heterogeneity": 50.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3150879", "Number of Sequences": "354", "Longest Sequences (bp)": "76563", "N50 (bp)": "13883", "Gap Ratio (%)": "0.004126", "GCcontent (%)": "57.8", "Number of CDSs": "2529", "Average Protein Length": "318.1", "Coding Ratio (%)": "76.6", "Number of rRNAs": "1", "Number of tRNAs": "46", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Desulfobulbus elongatus", "strain": "strain=DSM 2908", "accession": "GCA_000621145.1", "taxid": 53332, "species_taxid": 53332, "relation_to_type": "type", "validated": true, "ani": 77.3288, "matched_fragments": 173, "total_fragments": 871, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfogranum mediterraneum", "strain": "strain=DSM 13871", "accession": "GCA_000429965.1", "taxid": 160661, "species_taxid": 160661, "relation_to_type": "type", "validated": true, "ani": 77.2885, "matched_fragments": 206, "total_fragments": 871, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfobulbus propionicus", "strain": "strain=DSM 2032", "accession": "GCA_000186885.1", "taxid": 894, "species_taxid": 894, "relation_to_type": "type", "validated": true, "ani": 77.1965, "matched_fragments": 164, "total_fragments": 871, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfobulbus oralis", "strain": "strain=HOT041/ORNL", "accession": "GCA_002952055.1", "taxid": 1986146, "species_taxid": 1986146, "relation_to_type": "type", "validated": true, "ani": 76.576, "matched_fragments": 60, "total_fragments": 871, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfoprunum benzoelyticum", "strain": "strain=DSM 28570", "accession": "GCA_014201505.1", "taxid": 1506996, "species_taxid": 1506996, "relation_to_type": "type", "validated": true, "ani": 76.3174, "matched_fragments": 84, "total_fragments": 871, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfoprunum benzoelyticum", "strain": "strain=DSM 28570", "accession": "GCA_016918515.1", "taxid": 1506996, "species_taxid": 1506996, "relation_to_type": "type", "validated": true, "ani": 76.3083, "matched_fragments": 83, "total_fragments": 871, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfobulbus rhabdoformis", "strain": "strain=DSM 8777", "accession": "GCA_016919065.1", "taxid": 34032, "species_taxid": 34032, "relation_to_type": "type", "validated": true, "ani": 76.1279, "matched_fragments": 82, "total_fragments": 871, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 98.86, "contamination": 1.5, "strain_heterogeneity": 50.0 }, "gtdb_result": [ { "accession": "GCA_015484845.1", "gtdb_species": "s__DRKI01 sp015484845", "ani": 79.1133, "matched_fragments": 341, "total_fragments": 871, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobulbia;o__Desulfobulbales;f__Desulfobulbaceae;g__DRKI01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", 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