{ "type": "genome", "identifier": "GCA_027310305.1", "organism": "Herminiimonas sp.", "title": "Herminiimonas sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "an eLibrary of Microbial Systematics and Genomics", "publication": [ {} ], "properties": { "assembly_accession": "GCA_027310305.1", "bioproject": "PRJNA834572", "biosample": "SAMN28081208", "wgs_master": "DAIDBD000000000.1", "refseq_category": "na", "taxid": "1926289", "species_taxid": "1926289", "organism_name": "Herminiimonas sp.", "infraspecific_name": "", "isolate": "clean1857", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/12/27", "asm_name": "ASM2731030v1", "submitter": "an eLibrary of Microbial Systematics and Genomics", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/027/310/305/GCA_027310305.1_ASM2731030v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-12-27", "dateModified": "2022-12-27", "datePublished": "2022-12-27", "_annotation": { "sample_count": 1, "sample_organism": [ "Herminiimonas sp." ], "sample_taxid": [ "1926289" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Brazil: Canaa dos Carajas" ], "sample_host_location_id": [], "data_size": "1.129 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.63, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4014293", "Number of Sequences": "129", "Longest Sequences (bp)": "249231", "N50 (bp)": "51199", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "57.8", "Number of CDSs": "3751", "Average Protein Length": "307.2", "Coding Ratio (%)": "86.1", "Number of rRNAs": "0", "Number of tRNAs": "45", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Noviherbaspirillum cavernae", "strain": "strain=K2R10-39", "accession": "GCA_003590875.1", "taxid": 2320862, "species_taxid": 2320862, "relation_to_type": "type", "validated": true, "ani": 79.5607, "matched_fragments": 492, "total_fragments": 1270, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oxalicibacterium solurbis", "strain": "strain=CCM 7664", "accession": "GCA_014635845.1", "taxid": 69280, "species_taxid": 69280, "relation_to_type": "type", "validated": true, "ani": 79.2836, "matched_fragments": 368, "total_fragments": 1270, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Noviherbaspirillum autotrophicum", "strain": "strain=TSA66", "accession": "GCA_000818395.1", "taxid": 709839, "species_taxid": 709839, "relation_to_type": "type", "validated": true, "ani": 79.2245, "matched_fragments": 476, "total_fragments": 1270, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Collimonas fungivorans", "strain": "strain=Ter6", "accession": "GCA_001584145.1", "taxid": 158899, "species_taxid": 158899, "relation_to_type": "type", "validated": true, "ani": 79.1825, "matched_fragments": 406, "total_fragments": 1270, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Collimonas humicola", "strain": "strain=RLT1W51", "accession": "GCA_018304945.1", "taxid": 2825886, "species_taxid": 2825886, "relation_to_type": "type", "validated": true, "ani": 79.1765, "matched_fragments": 396, "total_fragments": 1270, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Noviherbaspirillum aerium", "strain": "strain=122213-3", "accession": "GCA_008929045.1", "taxid": 2588497, "species_taxid": 2588497, "relation_to_type": "type", "validated": true, "ani": 79.0197, "matched_fragments": 471, "total_fragments": 1270, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Noviherbaspirillum malthae", "strain": "strain=CC-AFH3", "accession": "GCA_015352985.1", "taxid": 1260987, "species_taxid": 1260987, "relation_to_type": "type", "validated": true, "ani": 78.9775, "matched_fragments": 503, "total_fragments": 1270, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Noviherbaspirillum massiliense", "strain": "strain=JC206", "accession": "GCA_000312045.1", "taxid": 1465823, "species_taxid": 1465823, "relation_to_type": "type", "validated": true, "ani": 78.9644, "matched_fragments": 445, "total_fragments": 1270, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Noviherbaspirillum saxi", "strain": "strain=K1R23-30", "accession": "GCA_003591035.1", "taxid": 2320863, "species_taxid": 2320863, 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"matched_fragments": 385, "total_fragments": 1270, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Herbaspirillum rhizosphaerae", "strain": "strain=UMS-37", "accession": "GCA_001189965.1", "taxid": 346179, "species_taxid": 346179, "relation_to_type": "type", "validated": true, "ani": 78.7143, "matched_fragments": 439, "total_fragments": 1270, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Noviherbaspirillum aridicola", "strain": "strain=NCCP-691", "accession": "GCA_019656455.1", "taxid": 2849687, "species_taxid": 2849687, "relation_to_type": "type", "validated": true, "ani": 78.7107, "matched_fragments": 460, "total_fragments": 1270, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Noviherbaspirillum pedocola", "strain": "strain=DKR-6", "accession": "GCA_016632335.1", "taxid": 2801341, "species_taxid": 2801341, "relation_to_type": "type", "validated": true, "ani": 78.6903, "matched_fragments": 465, "total_fragments": 1270, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Herbaspirillum hiltneri", "strain": "strain=N3", "accession": "GCA_001267925.1", "taxid": 341045, "species_taxid": 341045, "relation_to_type": "type", "validated": true, "ani": 78.6896, "matched_fragments": 431, "total_fragments": 1270, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Collimonas antrihumi", "strain": "strain=DSM 104040", "accession": "GCA_018304965.1", "taxid": 1940615, "species_taxid": 1940615, "relation_to_type": "type", "validated": true, "ani": 78.5597, "matched_fragments": 366, "total_fragments": 1270, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Collimonas arenae", "strain": "strain=Ter10", "accession": "GCA_001584165.1", "taxid": 279058, "species_taxid": 279058, "relation_to_type": "type", "validated": true, "ani": 78.4503, "matched_fragments": 365, "total_fragments": 1270, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia soli", "strain": "strain=R798", "accession": "GCA_016809835.2", "taxid": 2792854, "species_taxid": 2792854, "relation_to_type": "type", "validated": true, "ani": 78.4108, "matched_fragments": 360, "total_fragments": 1270, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia solisilvae", "strain": "strain=JCM 31607", "accession": "GCA_024753215.1", "taxid": 1811225, "species_taxid": 1811225, "relation_to_type": "type", "validated": true, "ani": 77.8913, "matched_fragments": 344, "total_fragments": 1270, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia agilis", "strain": "strain=JCM 31605", "accession": "GCA_024756255.1", "taxid": 1811226, "species_taxid": 1811226, "relation_to_type": "type", "validated": true, "ani": 77.8402, "matched_fragments": 351, "total_fragments": 1270, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Herminiimonas arsenitoxidans", 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