{ "type": "genome", "identifier": "GCA_027310505.1", "organism": "bacterium", "title": "bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "an eLibrary of Microbial Systematics and Genomics", "publication": [ {} ], "properties": { "assembly_accession": "GCA_027310505.1", "bioproject": "PRJNA834572", "biosample": "SAMN28081197", "wgs_master": "DAIDAS000000000.1", "refseq_category": "na", "taxid": "1869227", "species_taxid": "1869227", "organism_name": "bacterium", "infraspecific_name": "", "isolate": "clean1845", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/12/27", "asm_name": "ASM2731050v1", "submitter": "an eLibrary of Microbial Systematics and Genomics", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/027/310/505/GCA_027310505.1_ASM2731050v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-12-27", "dateModified": "2022-12-27", "datePublished": "2022-12-27", "_annotation": { "sample_count": 1, "sample_organism": [ "bacterium" ], "sample_taxid": [ "1869227" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Brazil: Canaa dos Carajas" ], "sample_host_location_id": [], "data_size": "0.729 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 83.48, "contamination": 1.04, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2540990", "Number of Sequences": "483", "Longest Sequences (bp)": "26785", "N50 (bp)": "6342", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "57.1", "Number of CDSs": "2174", "Average Protein Length": "276.4", "Coding Ratio (%)": "70.9", "Number of rRNAs": "0", "Number of tRNAs": "33", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Novimethylophilus kurashikiensis", "strain": "strain=La2-4", "accession": "GCA_003112435.1", "taxid": 1825523, "species_taxid": 1825523, "relation_to_type": "type", "validated": true, "ani": 78.0998, "matched_fragments": 166, "total_fragments": 603, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomethylobacillus aquaticus", "strain": "strain=H-5", "accession": "GCA_003730115.1", "taxid": 2676064, "species_taxid": 2676064, "relation_to_type": "type", "validated": true, "ani": 77.9646, "matched_fragments": 120, "total_fragments": 603, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thiobacillus thioparus", "strain": "strain=DSM 505", "accession": "GCA_000373385.1", "taxid": 931, "species_taxid": 931, "relation_to_type": "type", "validated": true, "ani": 77.6025, "matched_fragments": 80, "total_fragments": 603, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacillus arboreus", "strain": "strain=VKM B-2590", "accession": "GCA_020532725.1", "taxid": 755170, "species_taxid": 755170, "relation_to_type": "type", "validated": true, "ani": 77.3912, "matched_fragments": 92, "total_fragments": 603, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ferrigenium kumadai", "strain": "strain=An22", "accession": "GCA_018324385.1", "taxid": 1682490, "species_taxid": 1682490, "relation_to_type": "type", "validated": true, "ani": 77.3425, "matched_fragments": 93, "total_fragments": 603, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylovorus menthalis", "strain": "strain=VKM B-2663", "accession": "GCA_020523625.1", "taxid": 1002227, "species_taxid": 1002227, "relation_to_type": "type", "validated": true, "ani": 77.3324, "matched_fragments": 96, "total_fragments": 603, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylovorus glucosotrophus", "strain": "strain=DSM 6874", "accession": "GCA_009858335.1", "taxid": 266009, "species_taxid": 266009, "relation_to_type": "type", "validated": true, "ani": 77.2935, "matched_fragments": 111, "total_fragments": 603, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ralstonia mannitolilytica", "strain": "strain=LMG 6866", "accession": "GCA_905397375.1", "taxid": 105219, "species_taxid": 105219, "relation_to_type": "type", "validated": true, "ani": 77.1649, "matched_fragments": 54, "total_fragments": 603, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfurimicrobium lacus", "strain": "strain=skT11", "accession": "GCA_011764585.1", "taxid": 2715678, "species_taxid": 2715678, "relation_to_type": "type", "validated": true, "ani": 77.1402, "matched_fragments": 98, "total_fragments": 603, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacillus flagellatus", "strain": "strain=KT", "accession": "GCA_000013705.1", "taxid": 405, "species_taxid": 405, "relation_to_type": "type", "validated": true, "ani": 77.1378, "matched_fragments": 84, "total_fragments": 603, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thiobacillus denitrificans", "strain": "strain=DSM 12475", "accession": "GCA_000376425.1", "taxid": 36861, "species_taxid": 36861, "relation_to_type": "type", "validated": true, "ani": 76.9449, "matched_fragments": 90, "total_fragments": 603, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfuricella denitrificans", "strain": "strain=skB26", "accession": "GCA_000297055.2", "taxid": 649841, "species_taxid": 649841, "relation_to_type": "type", "validated": true, "ani": 76.8701, "matched_fragments": 86, "total_fragments": 603, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chromobacterium sphagni", "strain": "strain=IIBBL 14B-1", "accession": "GCA_001855555.1", "taxid": 1903179, "species_taxid": 1903179, "relation_to_type": "type", "validated": true, "ani": 76.8443, "matched_fragments": 69, "total_fragments": 603, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfuriferula plumbiphila", "strain": "strain=Gro7", "accession": "GCA_009938015.1", "taxid": 171865, "species_taxid": 171865, "relation_to_type": "type", "validated": true, "ani": 76.843, "matched_fragments": 79, "total_fragments": 603, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfuriferula plumbiphila", "strain": "strain=NBRC 107929", "accession": "GCA_007992375.1", "taxid": 171865, "species_taxid": 171865, "relation_to_type": "type", "validated": true, "ani": 76.8007, "matched_fragments": 78, "total_fragments": 603, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thauera butanivorans", "strain": "strain=NBRC 103042", "accession": "GCA_001591165.1", "taxid": 86174, "species_taxid": 86174, "relation_to_type": "type", "validated": true, "ani": 76.7853, "matched_fragments": 96, "total_fragments": 603, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Crenobacter sedimenti", "strain": "strain=HX-7-9", "accession": "GCA_010435965.1", "taxid": 2705474, "species_taxid": 2705474, "relation_to_type": "type", "validated": true, "ani": 76.7299, "matched_fragments": 61, "total_fragments": 603, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia aurea", "strain": "strain=JCM 13879", "accession": "GCA_024753205.1", "taxid": 373040, "species_taxid": 373040, "relation_to_type": "type", "validated": true, "ani": 76.7015, "matched_fragments": 58, "total_fragments": 603, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacillus caricis", "strain": "strain=VKM B-3158", "accession": "GCA_020532705.1", "taxid": 1971611, "species_taxid": 1971611, "relation_to_type": "type", "validated": true, "ani": 76.698, "matched_fragments": 82, "total_fragments": 603, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chromobacterium aquaticum", "strain": "strain=DSM 19852", "accession": "GCA_021129195.1", "taxid": 467180, "species_taxid": 467180, "relation_to_type": "type", "validated": true, "ani": 76.6591, "matched_fragments": 74, "total_fragments": 603, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Crenobacter intestini", "strain": "strain=GY 70310", "accession": "GCA_004919095.1", "taxid": 2563443, "species_taxid": 2563443, "relation_to_type": "type", "validated": true, "ani": 76.6235, "matched_fragments": 62, "total_fragments": 603, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Crenobacter cavernae", "strain": "strain=K1W11S-77", "accession": "GCA_003355495.1", "taxid": 2290923, "species_taxid": 2290923, "relation_to_type": "type", "validated": true, "ani": 76.5242, "matched_fragments": 71, "total_fragments": 603, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacillus gramineus", "strain": "strain=VKM B-2591", "accession": "GCA_020532675.1", "taxid": 755169, "species_taxid": 755169, "relation_to_type": "type", "validated": true, "ani": 76.4633, "matched_fragments": 64, "total_fragments": 603, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Janthinobacterium psychrotolerans", "strain": "strain=S3-2", "accession": "GCA_001677885.1", "taxid": 1747903, "species_taxid": 1747903, "relation_to_type": "type", "validated": true, "ani": 76.3318, "matched_fragments": 69, "total_fragments": 603, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oxalicibacterium solurbis", "strain": "strain=CCM 7664", "accession": "GCA_014635845.1", "taxid": 69280, 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