{ "type": "genome", "identifier": "GCA_027310635.1", "organism": "Methylomonas sp.", "title": "Methylomonas sp.", "description": "derived from metagenome; fragmented assembly", "data type": "Genome sequencing and assembly", "organization": "an eLibrary of Microbial Systematics and Genomics", "publication": [ {} ], "properties": { "assembly_accession": "GCA_027310635.1", "bioproject": "PRJNA834572", "biosample": "SAMN28081190", "wgs_master": "DAIDAL000000000.1", "refseq_category": "na", "taxid": "418", "species_taxid": "418", "organism_name": "Methylomonas sp.", "infraspecific_name": "", "isolate": "clean1847", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/12/27", "asm_name": "ASM2731063v1", "submitter": "an eLibrary of Microbial Systematics and Genomics", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/027/310/635/GCA_027310635.1_ASM2731063v1", "excluded_from_refseq": "derived from metagenome; fragmented assembly", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-12-27", "dateModified": "2022-12-27", "datePublished": "2022-12-27", "_annotation": { "sample_count": 1, "sample_organism": [ "Methylomonas sp." ], "sample_taxid": [ "418" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Brazil: Canaa dos Carajas" ], "sample_host_location_id": [], "data_size": "0.976 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 53.58, "contamination": 4.17, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3336582", "Number of Sequences": "1462", "Longest Sequences (bp)": "8918", "N50 (bp)": "2452", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "51.6", "Number of CDSs": "1982", "Average Protein Length": "231.1", "Coding Ratio (%)": "41.2", "Number of rRNAs": "0", "Number of tRNAs": "28", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Methylomonas koyamae", "strain": "strain=Fw12E-Y", "accession": "GCA_019669905.1", "taxid": 702114, "species_taxid": 702114, "relation_to_type": "suspected-type", "validated": true, "ani": 79.3494, "matched_fragments": 115, "total_fragments": 318, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylomonas koyamae", "strain": "strain=JCM 16701", "accession": "GCA_001312005.1", "taxid": 702114, "species_taxid": 702114, "relation_to_type": "suspected-type", "validated": true, "ani": 79.2621, "matched_fragments": 111, "total_fragments": 318, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylomonas 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