{
    "type": "genome",
    "identifier": "GCA_027315405.1",
    "organism": "Gammaproteobacteria bacterium",
    "title": "Gammaproteobacteria bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "an eLibrary of Microbial Systematics and Genomics",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_027315405.1",
        "bioproject": "PRJNA834572",
        "biosample": "SAMN28228175",
        "wgs_master": "DAHUYB000000000.1",
        "refseq_category": "na",
        "taxid": "1913989",
        "species_taxid": "1913989",
        "organism_name": "Gammaproteobacteria bacterium",
        "infraspecific_name": "",
        "isolate": "clean268",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/12/27",
        "asm_name": "ASM2731540v1",
        "submitter": "an eLibrary of Microbial Systematics and Genomics",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/027/315/405/GCA_027315405.1_ASM2731540v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-12-27",
    "dateModified": "2022-12-27",
    "datePublished": "2022-12-27",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Gammaproteobacteria bacterium"
        ],
        "sample_taxid": [
            "1913989"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China: Guizhou, Fuquan"
        ],
        "sample_host_location_id": [],
        "data_size": "0.813 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2840449",
        "Number of Sequences": "99",
        "Longest Sequences (bp)": "156732",
        "N50 (bp)": "62558",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "58.0",
        "Number of CDSs": "2676",
        "Average Protein Length": "300.1",
        "Coding Ratio (%)": "84.8",
        "Number of rRNAs": "1",
        "Number of tRNAs": "44",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "relation_to_type": "type",
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                "ani_threshold": 95,
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            },
            {
                "organism_name": "Thioalkalivibrio sulfidiphilus",
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                "taxid": 1033854,
                "species_taxid": 1033854,
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            {
                "organism_name": "Thioalkalivibrio denitrificans",
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                "status": "below_threshold"
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            {
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                "species_taxid": 585455,
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            {
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                "species_taxid": 155197,
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            {
                "organism_name": "Dyella acidiphila",
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                "accession": "GCA_014863405.1",
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            {
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                "ani_threshold": 95,
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                "organism_name": "Dyella amyloliquefaciens",
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                "accession": "GCA_004296575.1",
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                "matched_fragments": 56,
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                "ani_threshold": 95,
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            {
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                "accession": "GCA_019669985.1",
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            },
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                "organism_name": "Methylococcus geothermalis",
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            {
                "organism_name": "Plasticicumulans lactativorans",
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                "ani_threshold": 95,
                "status": "below_threshold"
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}