{ "type": "genome", "identifier": "GCA_027324985.1", "organism": "Tetrasphaera sp.", "title": "Tetrasphaera sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "an eLibrary of Microbial Systematics and Genomics", "publication": [ {} ], "properties": { "assembly_accession": "GCA_027324985.1", "bioproject": "PRJNA834572", "biosample": "SAMN28404515", "wgs_master": "DAHWFN000000000.1", "refseq_category": "na", "taxid": "1917966", "species_taxid": "1917966", "organism_name": "Tetrasphaera sp.", "infraspecific_name": "", "isolate": "clean932", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/12/27", "asm_name": "ASM2732498v1", "submitter": "an eLibrary of Microbial Systematics and Genomics", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/027/324/985/GCA_027324985.1_ASM2732498v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-12-27", "dateModified": "2022-12-27", "datePublished": "2022-12-27", "_annotation": { "sample_count": 1, "sample_organism": [ "Tetrasphaera sp." ], "sample_taxid": [ "1917966" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Guizhou, Banpo" ], "sample_host_location_id": [], "data_size": "0.590 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 91.67, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2200347", "Number of Sequences": "87", "Longest Sequences (bp)": "144787", "N50 (bp)": "37815", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "71.6", "Number of CDSs": "2033", "Average Protein Length": "321.9", "Coding Ratio (%)": "89.2", "Number of rRNAs": "0", "Number of tRNAs": "45", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Phycicoccus mangrovi", "strain": "strain=KQZ13P-1", "accession": "GCA_018729305.1", "taxid": 2840470, "species_taxid": 2840470, "relation_to_type": "type", "validated": true, "ani": 79.5494, "matched_fragments": 409, "total_fragments": 694, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Knoellia flava", "strain": "strain=CGMCC 1.10749", "accession": "GCA_014636255.1", "taxid": 913969, "species_taxid": 913969, "relation_to_type": "type", "validated": true, "ani": 79.5354, "matched_fragments": 376, "total_fragments": 694, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phycicoccus jejuensis", "strain": "strain=NRRL B-24460", 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1690220, "relation_to_type": "type", "validated": true, "ani": 79.3412, "matched_fragments": 380, "total_fragments": 694, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phycicoccus duodecadis", "strain": "strain=DSM 12806", "accession": "GCA_002846495.1", "taxid": 173053, "species_taxid": 173053, "relation_to_type": "type", "validated": true, "ani": 79.1759, "matched_fragments": 344, "total_fragments": 694, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phycicoccus flavus", "strain": "strain=CMS6Z-2", "accession": "GCA_004025965.2", "taxid": 2502783, "species_taxid": 2502783, "relation_to_type": "type", "validated": true, "ani": 79.142, "matched_fragments": 382, "total_fragments": 694, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Janibacter endophyticus", "strain": "strain=YIM B02568", "accession": "GCA_016888335.1", "taxid": 2806261, "species_taxid": 2806261, "relation_to_type": "type", "validated": true, "ani": 79.1402, "matched_fragments": 316, "total_fragments": 694, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Knoellia remsis", "strain": "strain=ATCC BAA-1496", "accession": "GCA_003002895.1", "taxid": 407159, "species_taxid": 407159, "relation_to_type": "type", "validated": true, "ani": 79.1292, "matched_fragments": 384, "total_fragments": 694, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Knoellia aerolata", "strain": "strain=DSM 18566", "accession": "GCA_000768695.1", "taxid": 442954, "species_taxid": 442954, "relation_to_type": "type", "validated": true, "ani": 78.9873, "matched_fragments": 362, "total_fragments": 694, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedococcus cremeus", "strain": "strain=CGMCC 1.6963", "accession": "GCA_900111375.1", "taxid": 587636, "species_taxid": 587636, "relation_to_type": "type", "validated": true, "ani": 78.9064, "matched_fragments": 351, "total_fragments": 694, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Knoellia subterranea", "strain": "strain=KCTC 19937", "accession": "GCA_000768685.1", "taxid": 184882, "species_taxid": 184882, "relation_to_type": "type", "validated": true, "ani": 78.8876, "matched_fragments": 324, "total_fragments": 694, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedococcus dokdonensis", "strain": "strain=DSM 22329", "accession": "GCA_900104525.1", "taxid": 443156, "species_taxid": 443156, "relation_to_type": "type", "validated": true, "ani": 78.8091, "matched_fragments": 317, "total_fragments": 694, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Janibacter melonis", "strain": "strain=NBRC107855", "accession": "GCA_020567375.1", "taxid": 262209, "species_taxid": 262209, "relation_to_type": "type", "validated": true, "ani": 78.7895, "matched_fragments": 344, "total_fragments": 694, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Janibacter terrae", "strain": "strain=NBRC 107853", "accession": "GCA_001591405.1", "taxid": 103817, "species_taxid": 103817, "relation_to_type": "type", "validated": true, "ani": 78.7185, "matched_fragments": 313, "total_fragments": 694, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Janibacter hoylei", "strain": "strain=PVAS-1", "accession": "GCA_000297495.1", "taxid": 364298, "species_taxid": 364298, "relation_to_type": "type", "validated": true, "ani": 78.5335, "matched_fragments": 304, "total_fragments": 694, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedococcus badiiscoriae", "strain": "strain=DSM 23987", "accession": "GCA_013408925.1", "taxid": 642776, "species_taxid": 642776, "relation_to_type": "type", "validated": true, "ani": 78.5103, "matched_fragments": 315, "total_fragments": 694, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Janibacter hoylei", "strain": "strain=PVAS-1", "accession": "GCA_004025845.1", "taxid": 364298, "species_taxid": 364298, "relation_to_type": "type", "validated": true, "ani": 78.4912, "matched_fragments": 306, "total_fragments": 694, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Intrasporangium chromatireducens", "strain": "strain=Q5-1", "accession": "GCA_000576575.1", "taxid": 1386088, "species_taxid": 1386088, "relation_to_type": "type", "validated": true, "ani": 78.4552, "matched_fragments": 304, "total_fragments": 694, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Knoellia sinensis", "strain": "strain=KCTC 19936", "accession": "GCA_000768705.1", "taxid": 136100, "species_taxid": 136100, "relation_to_type": "type", "validated": true, "ani": 78.4501, "matched_fragments": 301, "total_fragments": 694, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arsenicicoccus cauae", "strain": "strain=MKL-02", "accession": "GCA_009707125.1", "taxid": 2663847, 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