{ "type": "genome", "identifier": "GCA_027355695.1", "organism": "Verrucomicrobia subdivision 3 bacterium", "title": "Verrucomicrobia subdivision 3 bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "an eLibrary of Microbial Systematics and Genomics", "publication": [ {} ], "properties": { "assembly_accession": "GCA_027355695.1", "bioproject": "PRJNA834572", "biosample": "SAMN28404601", "wgs_master": "DAIEHJ000000000.1", "refseq_category": "na", "taxid": "2052186", "species_taxid": "2052186", "organism_name": "Verrucomicrobia subdivision 3 bacterium", "infraspecific_name": "", "isolate": "clean129", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/12/27", "asm_name": "ASM2735569v1", "submitter": "an eLibrary of Microbial Systematics and Genomics", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/027/355/695/GCA_027355695.1_ASM2735569v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-12-27", "dateModified": "2022-12-27", "datePublished": "2022-12-27", "_annotation": { "sample_count": 1, "sample_organism": [ "Limisphaerales bacterium" ], "sample_taxid": [ "2052186" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Guizhou, Banpo" ], "sample_host_location_id": [], "data_size": "1.444 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "5162468", "Number of Sequences": "174", "Longest Sequences (bp)": "142110", "N50 (bp)": "44500", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "65.3", "Number of CDSs": "4054", "Average Protein Length": "358.6", "Coding Ratio (%)": "84.5", "Number of rRNAs": "1", "Number of tRNAs": "50", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Limisphaera ngatamarikiensis", "strain": "strain=NGM72.4", "accession": "GCA_011044775.1", "taxid": 1324935, "species_taxid": 1324935, "relation_to_type": "type", "validated": true, "ani": 76.294, "matched_fragments": 124, "total_fragments": 1636, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chthoniobacter flavus", "strain": "strain=Ellin428", "accession": "GCA_000173075.1", "taxid": 191863, "species_taxid": 191863, "relation_to_type": "type", "validated": true, "ani": 75.6784, "matched_fragments": 90, "total_fragments": 1636, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prosthecobacter vanneervenii", "strain": "strain=DSM 12252", "accession": "GCA_014203095.1", "taxid": 48466, "species_taxid": 48466, "relation_to_type": "type", "validated": true, "ani": 75.5959, "matched_fragments": 52, "total_fragments": 1636, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chthoniobacter flavus", "strain": "strain=DSM 22515", "accession": "GCA_004341915.1", "taxid": 191863, "species_taxid": 191863, "relation_to_type": "type", "validated": true, "ani": 75.5906, "matched_fragments": 95, "total_fragments": 1636, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodocyclus purpureus", "strain": "strain=DSM 168", "accession": "GCA_016653115.1", "taxid": 1067, "species_taxid": 1067, "relation_to_type": "type", "validated": true, "ani": 75.2529, "matched_fragments": 55, "total_fragments": 1636, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudobythopirellula maris", "strain": "strain=Mal64", "accession": "GCA_007859945.1", "taxid": 2527991, "species_taxid": 2527991, "relation_to_type": "type", "validated": true, "ani": 75.0694, "matched_fragments": 53, "total_fragments": 1636, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylorubrum rhodinum", "strain": "strain=DSM 2163", "accession": "GCA_014199935.1", "taxid": 29428, "species_taxid": 29428, "relation_to_type": "type", "validated": true, "ani": 75.0097, "matched_fragments": 79, "total_fragments": 1636, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Posidoniimonas polymericola", "strain": "strain=Pla123a", "accession": "GCA_007859935.1", "taxid": 2528002, "species_taxid": 2528002, "relation_to_type": "type", "validated": true, "ani": 75.009, "matched_fragments": 60, "total_fragments": 1636, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Posidoniimonas corsicana", "strain": "strain=KOR34", "accession": "GCA_007859765.1", "taxid": 1938618, "species_taxid": 1938618, "relation_to_type": "type", "validated": true, "ani": 74.9941, "matched_fragments": 68, "total_fragments": 1636, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium nodulans", "strain": "strain=ORS 2060", "accession": "GCA_000022085.1", "taxid": 114616, "species_taxid": 114616, "relation_to_type": "type", "validated": true, "ani": 74.8516, "matched_fragments": 75, "total_fragments": 1636, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methyloversatilis discipulorum", "strain": "strain=FAM1", "accession": "GCA_000527135.1", "taxid": 1119528, "species_taxid": 1119528, "relation_to_type": "type", "validated": true, "ani": 74.8379, "matched_fragments": 72, "total_fragments": 1636, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylorubrum zatmanii", "strain": "strain=LMG 6087", "accession": "GCA_014845115.1", 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