{ "type": "genome", "identifier": "GCA_027405315.1", "organism": "Deinococcales bacterium", "title": "Deinococcales bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "an eLibrary of Microbial Systematics and Genomics", "publication": [ {} ], "properties": { "assembly_accession": "GCA_027405315.1", "bioproject": "PRJNA834572", "biosample": "SAMN28412067", "wgs_master": "DAHZAE000000000.1", "refseq_category": "na", "taxid": "2478479", "species_taxid": "2478479", "organism_name": "Deinococcales bacterium", "infraspecific_name": "", "isolate": "clean4670", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/12/27", "asm_name": "ASM2740531v1", "submitter": "an eLibrary of Microbial Systematics and Genomics", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/027/405/315/GCA_027405315.1_ASM2740531v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-12-27", "dateModified": "2022-12-27", "datePublished": "2022-12-27", "_annotation": { "sample_count": 1, "sample_organism": [ "Deinococcales bacterium" ], "sample_taxid": [ "2478479" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Anhui, Maanshan" ], "sample_host_location_id": [], "data_size": "0.630 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2280369", "Number of Sequences": "32", "Longest Sequences (bp)": "331350", "N50 (bp)": "113455", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "66.9", "Number of CDSs": "2096", "Average Protein Length": "330.7", "Coding Ratio (%)": "91.2", "Number of rRNAs": "1", "Number of tRNAs": "47", "Number of CRISPRs": "4" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Deinobacterium chartae", "strain": "strain=DSM 21458", "accession": "GCA_014202645.1", "taxid": 521158, "species_taxid": 521158, "relation_to_type": "type", "validated": true, "ani": 76.777, "matched_fragments": 102, "total_fragments": 743, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Deinococcus koreensis", "strain": "strain=SJW1-2", "accession": "GCA_002901445.1", "taxid": 2054903, "species_taxid": 2054903, "relation_to_type": "type", "validated": true, "ani": 76.3851, "matched_fragments": 97, "total_fragments": 743, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Deinococcus pimensis", "strain": "strain=DSM 21231", "accession": "GCA_000519345.1", "taxid": 309888, "species_taxid": 309888, "relation_to_type": "type", "validated": true, "ani": 76.2343, "matched_fragments": 74, "total_fragments": 743, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Deinococcus metalli", "strain": "strain=DSM 27521", "accession": "GCA_014201805.1", "taxid": 1141878, "species_taxid": 1141878, "relation_to_type": "type", "validated": true, "ani": 76.2133, "matched_fragments": 73, "total_fragments": 743, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Deinococcus actinosclerus", "strain": "strain=BM2", "accession": "GCA_001507665.1", "taxid": 1768108, "species_taxid": 1768108, "relation_to_type": "type", "validated": true, "ani": 76.1619, "matched_fragments": 70, "total_fragments": 743, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Deinococcus grandis", "strain": "strain=ATCC 43672", "accession": "GCA_001485435.1", "taxid": 57498, "species_taxid": 57498, "relation_to_type": "type", "validated": true, "ani": 76.1072, "matched_fragments": 58, "total_fragments": 743, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Deinococcus phoenicis", "strain": "strain=1P10ME", "accession": "GCA_000599865.1", "taxid": 1476583, "species_taxid": 1476583, "relation_to_type": "type", "validated": true, "ani": 76.0095, "matched_fragments": 68, "total_fragments": 743, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Deinococcus budaensis", "strain": "strain=DSM 101791", "accession": "GCA_014201885.1", "taxid": 1665626, "species_taxid": 1665626, "relation_to_type": "type", "validated": true, "ani": 75.9977, "matched_fragments": 78, "total_fragments": 743, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Deinococcus reticulitermitis", "strain": "strain=CGMCC 1.10218", "accession": "GCA_900109185.1", "taxid": 856736, "species_taxid": 856736, "relation_to_type": "type", "validated": true, "ani": 75.9749, "matched_fragments": 52, "total_fragments": 743, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Deinococcus xianganensis", "strain": "strain=Y35", "accession": "GCA_009834985.1", "taxid": 1507289, "species_taxid": 1507289, "relation_to_type": "type", "validated": true, "ani": 75.8485, "matched_fragments": 59, "total_fragments": 743, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Deinococcus aerophilus", "strain": "strain=JCM 15443", "accession": "GCA_014647075.1", "taxid": 522488, "species_taxid": 522488, "relation_to_type": "type", "validated": true, "ani": 75.8363, "matched_fragments": 72, "total_fragments": 743, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Deinococcus gobiensis", "strain": "strain=I-0", "accession": "GCA_000252445.1", "taxid": 502394, "species_taxid": 502394, "relation_to_type": "type", "validated": true, "ani": 75.7949, "matched_fragments": 90, "total_fragments": 743, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Deinococcus radiopugnans", "strain": "strain=ATCC 19172", "accession": "GCA_006335125.1", "taxid": 57497, "species_taxid": 57497, "relation_to_type": "type", "validated": true, "ani": 75.7244, "matched_fragments": 58, "total_fragments": 743, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Deinococcus kurensis", "strain": "strain=KR-1", "accession": "GCA_009687825.1", "taxid": 2662757, "species_taxid": 2662757, "relation_to_type": "type", "validated": true, "ani": 75.7126, "matched_fragments": 70, "total_fragments": 743, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Deinococcus radiopugnans", "strain": "strain=DSM 12027", "accession": "GCA_014201625.1", "taxid": 57497, "species_taxid": 57497, "relation_to_type": "type", "validated": true, "ani": 75.7066, "matched_fragments": 57, "total_fragments": 743, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Deinococcus seoulensis", "strain": "strain=JCM 31404", "accession": "GCA_014648115.1", "taxid": 1837379, "species_taxid": 1837379, "relation_to_type": "type", "validated": true, "ani": 75.6824, "matched_fragments": 62, "total_fragments": 743, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oceanithermus profundus", "strain": "strain=DSM 14977", "accession": "GCA_000183745.1", "taxid": 187137, "species_taxid": 187137, "relation_to_type": "type", "validated": true, "ani": 75.6382, "matched_fragments": 60, "total_fragments": 743, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Deinococcus alpinitundrae", "strain": "strain=LMG 24283", "accession": "GCA_009982895.1", "taxid": 468913, "species_taxid": 468913, "relation_to_type": "type", "validated": true, "ani": 75.5095, "matched_fragments": 76, "total_fragments": 743, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Deinococcus saudiensis", "strain": "strain=CGMCC 1.15089", "accession": "GCA_014640655.1", "taxid": 1765963, "species_taxid": 1765963, "relation_to_type": "type", "validated": true, "ani": 75.4859, "matched_fragments": 63, "total_fragments": 743, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Deinococcus daejeonensis", "strain": "strain=JCM 16918", "accession": "GCA_014647175.1", "taxid": 1007098, "species_taxid": 1007098, "relation_to_type": "type", "validated": true, "ani": 75.463, "matched_fragments": 58, "total_fragments": 743, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_014202645.1", "gtdb_species": "s__Deinobacterium chartae", "ani": 76.777, "matched_fragments": 102, "total_fragments": 743, "gtdb_taxonomy": 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