{
    "type": "genome",
    "identifier": "GCA_027430475.1",
    "organism": "Sphingobium sp.",
    "title": "Sphingobium sp.",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "an eLibrary of Microbial Systematics and Genomics",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_027430475.1",
        "bioproject": "PRJNA834572",
        "biosample": "SAMN28414034",
        "wgs_master": "DAIAJM000000000.1",
        "refseq_category": "na",
        "taxid": "1912891",
        "species_taxid": "1912891",
        "organism_name": "Sphingobium sp.",
        "infraspecific_name": "",
        "isolate": "clean6071",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/12/27",
        "asm_name": "ASM2743047v1",
        "submitter": "an eLibrary of Microbial Systematics and Genomics",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/027/430/475/GCA_027430475.1_ASM2743047v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-12-27",
    "dateModified": "2022-12-27",
    "datePublished": "2022-12-27",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Sphingobium sp."
        ],
        "sample_taxid": [
            "1912891"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China: Guizhou, Zhijin"
        ],
        "sample_host_location_id": [],
        "data_size": "1.120 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 79.75,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "4004271",
        "Number of Sequences": "97",
        "Longest Sequences (bp)": "209503",
        "N50 (bp)": "66059",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "62.1",
        "Number of CDSs": "3819",
        "Average Protein Length": "310.7",
        "Coding Ratio (%)": "88.9",
        "Number of rRNAs": "0",
        "Number of tRNAs": "45",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Sphingobium limneticum",
                "strain": "strain=DSM 25076",
                "accession": "GCA_008710155.1",
                "taxid": 1007511,
                "species_taxid": 1007511,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.6736,
                "matched_fragments": 769,
                "total_fragments": 1290,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingobium yanoikuyae",
                "strain": "strain=ATCC 51230",
                "accession": "GCA_000315525.1",
                "taxid": 13690,
                "species_taxid": 13690,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 83.649,
                "matched_fragments": 773,
                "total_fragments": 1290,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingobium scionense",
                "strain": "strain=DSM 19371",
                "accession": "GCA_014197035.1",
                "taxid": 1404341,
                "species_taxid": 1404341,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.012,
                "matched_fragments": 792,
                "total_fragments": 1290,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingobium cupriresistens",
                "strain": "strain=CCTCC AB 2011146",
                "accession": "GCA_004152865.1",
                "taxid": 1132417,
                "species_taxid": 1132417,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.7701,
                "matched_fragments": 694,
                "total_fragments": 1290,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingobium psychrophilum",
                "strain": "strain=AR-3-1",
                "accession": "GCA_012927105.1",
                "taxid": 2728834,
                "species_taxid": 2728834,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.3533,
                "matched_fragments": 697,
                "total_fragments": 1290,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingobium amiense",
                "strain": "strain=NBRC 102518",
                "accession": "GCA_001591305.1",
                "taxid": 135719,
                "species_taxid": 135719,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.22,
                "matched_fragments": 584,
                "total_fragments": 1290,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingobium chlorophenolicum",
                "strain": "strain=NBRC 16172",
                "accession": "GCA_001598515.1",
                "taxid": 46429,
                "species_taxid": 46429,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.1882,
                "matched_fragments": 530,
                "total_fragments": 1290,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingobium amiense",
                "strain": "strain=DSM 16289",
                "accession": "GCA_003967075.1",
                "taxid": 135719,
                "species_taxid": 135719,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.1241,
                "matched_fragments": 610,
                "total_fragments": 1290,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingobium chlorophenolicum",
                "strain": "strain=NBRC 16172",
                "accession": "GCA_000722875.1",
                "taxid": 46429,
                "species_taxid": 46429,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.0961,
                "matched_fragments": 570,
                "total_fragments": 1290,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingobium xenophagum",
                "strain": "strain=NBRC 107872",
                "accession": "GCA_000367345.1",
                "taxid": 121428,
                "species_taxid": 121428,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.9922,
                "matched_fragments": 631,
                "total_fragments": 1290,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingobium estronivorans",
                "strain": "strain=AXB",
                "accession": "GCA_008692605.1",
                "taxid": 1577690,
                "species_taxid": 1577690,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.9738,
                "matched_fragments": 563,
                "total_fragments": 1290,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingobium terrigena",
                "strain": "strain=EO9",
                "accession": "GCA_003591655.1",
                "taxid": 2304063,
                "species_taxid": 2304063,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.9135,
                "matched_fragments": 691,
                "total_fragments": 1290,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingobium sufflavum",
                "strain": "strain=HL-25",
                "accession": "GCA_021403115.1",
                "taxid": 1129547,
                "species_taxid": 1129547,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.5293,
                "matched_fragments": 354,
                "total_fragments": 1290,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingomonas suaedae",
                "strain": "strain=XS-10",
                "accession": "GCA_007833215.1",
                "taxid": 2599297,
                "species_taxid": 2599297,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.5427,
                "matched_fragments": 257,
                "total_fragments": 1290,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingomonas cavernae",
                "strain": "strain=K2R01-6",
                "accession": "GCA_003590775.1",
                "taxid": 2320861,
                "species_taxid": 2320861,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.481,
                "matched_fragments": 236,
                "total_fragments": 1290,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingomonas flavalba",
                "strain": "strain=ZLT-5",
                "accession": "GCA_004796535.1",
                "taxid": 2559804,
                "species_taxid": 2559804,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.2618,
                "matched_fragments": 249,
                "total_fragments": 1290,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhizorhabdus phycosphaerae",
                "strain": "strain=MK52",
                "accession": "GCA_011044255.1",
                "taxid": 2711156,
                "species_taxid": 2711156,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.2253,
                "matched_fragments": 236,
                "total_fragments": 1290,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 79.75,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_008710155.1",
                "gtdb_species": "s__Sphingobium limneticum",
                "ani": 83.6943,
                "matched_fragments": 767,
                "total_fragments": 1290,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.69",
                "min_intra_species_ani": "97.69",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCF_000315525.1",
                "gtdb_species": "s__Sphingobium yanoikuyae",
                "ani": 83.6341,
                "matched_fragments": 774,
                "total_fragments": 1290,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.25",
                "min_intra_species_ani": "95.31",
                "mean_intra_species_af": "0.82",
                "min_intra_species_af": "0.72",
                "num_clustered_genomes": 34,
                "status": "-"
            },
            {
                "accession": "GCF_900109095.1",
                "gtdb_species": "s__Sphingobium sp900109095",
                "ani": 83.5448,
                "matched_fragments": 728,
                "total_fragments": 1290,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900111125.1",
                "gtdb_species": "s__Sphingobium sp900111125",
                "ani": 83.4983,
                "matched_fragments": 757,
                "total_fragments": 1290,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014203965.1",
                "gtdb_species": "s__Sphingobium sp014203965",
                "ani": 83.3955,
                "matched_fragments": 725,
                "total_fragments": 1290,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_009720145.1",
                "gtdb_species": "s__Sphingobium sp009720145",
                "ani": 83.3787,
                "matched_fragments": 690,
                "total_fragments": 1290,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001650725.1",
                "gtdb_species": "s__Sphingobium sp001650725",
                "ani": 83.2862,
                "matched_fragments": 725,
                "total_fragments": 1290,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.12",
                "min_intra_species_ani": "99.12",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_013393185.1",
                "gtdb_species": "s__Sphingobium lactosutens_A",
                "ani": 82.9762,
                "matched_fragments": 691,
                "total_fragments": 1290,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004152865.1",
                "gtdb_species": "s__Sphingobium cupriresistens",
                "ani": 82.7843,
                "matched_fragments": 693,
                "total_fragments": 1290,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.64",
                "min_intra_species_ani": "98.49",
                "mean_intra_species_af": "0.81",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_900013425.1",
                "gtdb_species": "s__Sphingobium sp900013425",
                "ani": 82.3201,
                "matched_fragments": 708,
                "total_fragments": 1290,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.97",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCF_000722875.1",
                "gtdb_species": "s__Sphingobium chlorophenolicum",
                "ani": 82.0975,
                "matched_fragments": 570,
                "total_fragments": 1290,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.94",
                "min_intra_species_ani": "95.89",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.76",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_008692605.1",
                "gtdb_species": "s__Sphingobium estronivorans",
                "ani": 81.9952,
                "matched_fragments": 561,
                "total_fragments": 1290,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003591655.1",
                "gtdb_species": "s__Sphingobium sp003591655",
                "ani": 81.9135,
                "matched_fragments": 691,
                "total_fragments": 1290,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001713415.1",
                "gtdb_species": "s__Sphingobium sp001713415",
                "ani": 81.4598,
                "matched_fragments": 638,
                "total_fragments": 1290,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.59",
                "min_intra_species_ani": "95.59",
                "mean_intra_species_af": "0.75",
                "min_intra_species_af": "0.75",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.278,
        "cell_length": 0.094,
        "doubling_h": null,
        "growth_tmp": 28.352,
        "optimum_tmp": 28.868,
        "optimum_ph": 7.125,
        "genome_size": 4749227.887,
        "gc_content": 63.812,
        "coding_genes": 4211.023,
        "rRNA16S_genes": 2.333,
        "tRNA_genes": 53.785,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.347,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Alphaproteobacteria",
        "o__Sphingomonadales",
        "f__Sphingomonadaceae",
        "g__Sphingobium",
        "s__Sphingobium sp021847605"
    ],
    "_genome_taxon": [
        "Sphingobium",
        "sp.",
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Alphaproteobacteria",
        "o__Sphingomonadales",
        "f__Sphingomonadaceae",
        "g__Sphingobium",
        "s__Sphingobium sp021847605",
        "Bacteria",
        "Pseudomonadota",
        "Alphaproteobacteria",
        "Sphingomonadales",
        "Sphingomonadaceae",
        "Sphingobium",
        "Sphingobium",
        "sp021847605"
    ],
    "_meo": [
        {
            "id": "MEO_0000066",
            "label": "sediment"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}