{ "type": "genome", "identifier": "GCA_027430875.1", "organism": "Paracoccaceae bacterium", "title": "Paracoccaceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "an eLibrary of Microbial Systematics and Genomics", "publication": [ {} ], "properties": { "assembly_accession": "GCA_027430875.1", "bioproject": "PRJNA834572", "biosample": "SAMN28414011", "wgs_master": "DAIAIS000000000.1", "refseq_category": "na", "taxid": "1904441", "species_taxid": "1904441", "organism_name": "Paracoccaceae bacterium", "infraspecific_name": "", "isolate": "clean6047", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/12/27", "asm_name": "ASM2743087v1", "submitter": "an eLibrary of Microbial Systematics and Genomics", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/027/430/875/GCA_027430875.1_ASM2743087v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-12-27", "dateModified": "2022-12-27", "datePublished": "2022-12-27", "_annotation": { "sample_count": 1, "sample_organism": [ "Paracoccaceae bacterium" ], "sample_taxid": [ "1904441" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Guizhou, Banpo" ], "sample_host_location_id": [], "data_size": "0.805 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 58.8, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2929420", "Number of Sequences": "301", "Longest Sequences (bp)": "66268", "N50 (bp)": "11640", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "66.6", "Number of CDSs": "2562", "Average Protein Length": "299.7", "Coding Ratio (%)": "78.6", "Number of rRNAs": "1", "Number of tRNAs": "39", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Rhodobacter flagellatus", "strain": "strain=SYSU G03088", "accession": "GCA_008271465.1", "taxid": 2593021, "species_taxid": 2593021, "relation_to_type": "type", "validated": true, "ani": 79.2225, "matched_fragments": 437, "total_fragments": 818, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodobacter calidifons", "strain": "strain=M37P", "accession": "GCA_011174775.1", "taxid": 2715277, "species_taxid": 2715277, "relation_to_type": "type", "validated": true, "ani": 79.2192, "matched_fragments": 448, "total_fragments": 818, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodobacter thermarum", "strain": "strain=YIM 73036", "accession": "GCA_003574395.1", "taxid": 2670345, "species_taxid": 2670345, "relation_to_type": "type", "validated": true, "ani": 79.1859, "matched_fragments": 446, "total_fragments": 818, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodobacter tardus", "strain": "strain=CYK-10", "accession": "GCA_009925085.1", "taxid": 2699202, "species_taxid": 2699202, "relation_to_type": "type", "validated": true, "ani": 79.034, "matched_fragments": 433, "total_fragments": 818, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cereibacter changlensis", "strain": "strain=JA139", "accession": "GCA_003034985.1", "taxid": 402884, "species_taxid": 402884, "relation_to_type": "type", "validated": true, "ani": 78.9767, "matched_fragments": 378, "total_fragments": 818, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cereibacter changlensis", "strain": "strain=DSM 18774", "accession": "GCA_003254335.1", "taxid": 402884, "species_taxid": 402884, "relation_to_type": "type", "validated": true, "ani": 78.9678, "matched_fragments": 393, "total_fragments": 818, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gemmobacter straminiformis", "strain": "strain=CAM-8", "accession": "GCA_014243445.1", "taxid": 2045119, "species_taxid": 2045119, "relation_to_type": "type", "validated": true, "ani": 78.6314, "matched_fragments": 392, "total_fragments": 818, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodobacter amnigenus", "strain": "strain=HSP-20", "accession": "GCA_009908265.2", "taxid": 2852097, "species_taxid": 2852097, "relation_to_type": "type", "validated": true, "ani": 78.6127, "matched_fragments": 401, "total_fragments": 818, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodobacter amnigenus", "strain": "strain=HSP-20", "accession": "GCA_019130055.1", "taxid": 2852097, "species_taxid": 2852097, "relation_to_type": "type", "validated": true, "ani": 78.6032, "matched_fragments": 402, "total_fragments": 818, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cereibacter ovatus", "strain": "strain=JA234", "accession": "GCA_900207575.1", "taxid": 439529, "species_taxid": 439529, "relation_to_type": "type", "validated": true, "ani": 78.5763, "matched_fragments": 339, "total_fragments": 818, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodobacter ruber", "strain": "strain=CCP-1", "accession": "GCA_009908315.1", "taxid": 1985673, "species_taxid": 1985673, "relation_to_type": "type", "validated": true, "ani": 78.539, "matched_fragments": 376, "total_fragments": 818, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gemmobacter fulva", "strain": "strain=con5", "accession": "GCA_018798885.1", "taxid": 2840474, "species_taxid": 2840474, "relation_to_type": "type", "validated": true, "ani": 78.4688, "matched_fragments": 405, "total_fragments": 818, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gemmobacter lanyuensis", "strain": "strain=KCTC 23714", "accession": "GCA_014652355.1", "taxid": 1054497, "species_taxid": 1054497, "relation_to_type": "type", "validated": true, "ani": 78.4331, "matched_fragments": 375, "total_fragments": 818, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Frigidibacter albus", "strain": "strain=CGMCC 1.13995", "accession": "GCA_014640395.1", "taxid": 1465486, "species_taxid": 1465486, "relation_to_type": "type", "validated": true, "ani": 78.2533, "matched_fragments": 347, "total_fragments": 818, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Frigidibacter albus", "strain": "strain=SP32", "accession": "GCA_009908165.1", "taxid": 1465486, "species_taxid": 1465486, "relation_to_type": "type", "validated": true, "ani": 78.2521, "matched_fragments": 344, "total_fragments": 818, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tabrizicola alkalilacus", "strain": "strain=DJC", "accession": "GCA_003443995.1", "taxid": 2305252, "species_taxid": 2305252, "relation_to_type": "type", "validated": true, "ani": 78.2307, "matched_fragments": 348, "total_fragments": 818, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Frigidibacter albus", "strain": "strain=SP32", "accession": "GCA_010993795.1", "taxid": 1465486, "species_taxid": 1465486, "relation_to_type": "type", "validated": true, "ani": 78.2209, "matched_fragments": 346, "total_fragments": 818, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Frigidibacter albus", "strain": "strain=SP32", "accession": "GCA_009881095.1", "taxid": 1465486, "species_taxid": 1465486, "relation_to_type": "type", "validated": true, "ani": 78.2061, "matched_fragments": 349, "total_fragments": 818, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tabrizicola sediminis", "strain": "strain=DRYC-M-16", "accession": "GCA_004745575.1", "taxid": 2486418, "species_taxid": 2486418, "relation_to_type": "type", "validated": true, "ani": 78.1427, "matched_fragments": 325, "total_fragments": 818, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Frigidibacter mobilis", "strain": "strain=cai42", "accession": "GCA_001620265.1", "taxid": 1335048, "species_taxid": 1335048, "relation_to_type": "type", "validated": true, "ani": 78.1115, "matched_fragments": 343, "total_fragments": 818, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tabrizicola algicola", "strain": "strain=ETT8", "accession": "GCA_010915705.1", "taxid": 2709381, "species_taxid": 2709381, "relation_to_type": "type", "validated": true, "ani": 78.1077, "matched_fragments": 344, "total_fragments": 818, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus versutus", "strain": "strain=DSM 582", "accession": "GCA_000763885.1", "taxid": 34007, "species_taxid": 34007, "relation_to_type": "type", "validated": true, "ani": 77.9412, "matched_fragments": 328, "total_fragments": 818, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus versutus", "strain": "strain=DSM 582", "accession": "GCA_003387045.1", "taxid": 34007, "species_taxid": 34007, "relation_to_type": "type", "validated": true, "ani": 77.8937, "matched_fragments": 336, "total_fragments": 818, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gemmobacter megaterium", "strain": "strain=DSM 26375", "accession": "GCA_900156815.1", "taxid": 1086013, "species_taxid": 1086013, "relation_to_type": "type", "validated": true, "ani": 77.7828, "matched_fragments": 272, "total_fragments": 818, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus shandongensis", "strain": "strain=wg2", "accession": "GCA_017315735.1", "taxid": 2816048, "species_taxid": 2816048, "relation_to_type": "type", "validated": true, "ani": 77.7206, "matched_fragments": 281, "total_fragments": 818, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus sediminis", "strain": "strain=CMB17", "accession": "GCA_004310385.1", "taxid": 1214787, "species_taxid": 1214787, "relation_to_type": "type", "validated": true, "ani": 77.545, "matched_fragments": 253, "total_fragments": 818, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus sediminis", "strain": "strain=DSM 26170", "accession": "GCA_900188295.1", "taxid": 1214787, "species_taxid": 1214787, "relation_to_type": "type", "validated": true, "ani": 77.4874, "matched_fragments": 252, "total_fragments": 818, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 58.8, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_014859945.1", "gtdb_species": "s__UBA1943 sp014859945", "ani": 79.8027, "matched_fragments": 383, "total_fragments": 818, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__UBA1943", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003034965.1", "gtdb_species": "s__Fuscovulum blasticum", "ani": 79.4203, "matched_fragments": 408, "total_fragments": 818, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Fuscovulum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.58", "min_intra_species_ani": "97.58", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.96", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_014763725.1", "gtdb_species": "s__JACXUX01 sp014763725", "ani": 79.365, "matched_fragments": 325, "total_fragments": 818, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__JACXUX01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_011008935.1", "gtdb_species": "s__KMS-5 sp011008935", "ani": 79.352, "matched_fragments": 469, "total_fragments": 818, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__KMS-5", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_013693875.1", "gtdb_species": "s__SSD5 sp013693875", "ani": 79.3145, "matched_fragments": 458, "total_fragments": 818, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__SSD5", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003574395.1", "gtdb_species": "s__Tabrizicola thermarum", "ani": 79.255, "matched_fragments": 439, "total_fragments": 818, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Tabrizicola", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.33", "min_intra_species_ani": "97.31", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.92", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_013328815.1", "gtdb_species": "s__UBA1943 sp013328815", "ani": 79.1474, "matched_fragments": 467, "total_fragments": 818, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__UBA1943", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.27", "min_intra_species_ani": "97.27", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.97", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_004799285.1", "gtdb_species": "s__Gemmobacter_D aestuarii", "ani": 79.0953, "matched_fragments": 403, "total_fragments": 818, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Gemmobacter_D", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_009925085.1", "gtdb_species": "s__CYK-10 sp009925085", "ani": 79.0236, "matched_fragments": 434, "total_fragments": 818, "gtdb_taxonomy": 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"d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Pseudorhodobacter_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_011059185.1", "gtdb_species": "s__Gemmobacter_B sp011059185", "ani": 78.7483, "matched_fragments": 416, "total_fragments": 818, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Gemmobacter_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014243445.1", "gtdb_species": "s__Gemmobacter_B straminiformis", "ani": 78.631, "matched_fragments": 392, "total_fragments": 818, "gtdb_taxonomy": 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"d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Cereibacter_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009908315.1", "gtdb_species": "s__Gemmobacter_B sp009908315", "ani": 78.5392, "matched_fragments": 376, "total_fragments": 818, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Gemmobacter_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003993775.1", "gtdb_species": "s__Frigidibacter sp003993775", "ani": 78.4792, "matched_fragments": 370, "total_fragments": 818, "gtdb_taxonomy": 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