{ "tc_result": [ { "organism_name": "Thiomonas bhubaneswarensis", "strain": "strain=DSM 18181", "accession": "GCA_001517285.1", "taxid": 339866, "species_taxid": 339866, "relation_to_type": "type", "validated": true, "ani": 79.3838, "matched_fragments": 427, "total_fragments": 886, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thiomonas bhubaneswarensis", "strain": "strain=DSM 18181", "accession": "GCA_001418255.1", "taxid": 339866, "species_taxid": 339866, "relation_to_type": "type", "validated": true, "ani": 79.3606, "matched_fragments": 429, "total_fragments": 886, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thiomonas intermedia", "strain": "strain=ATCC 15466", "accession": "GCA_002028405.1", "taxid": 926, "species_taxid": 926, "relation_to_type": "type", "validated": true, "ani": 79.1695, "matched_fragments": 408, "total_fragments": 886, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thiomonas arsenitoxydans", "strain": "strain=3As", "accession": "GCA_000253115.1", "taxid": 426114, "species_taxid": 426114, "relation_to_type": "type", "validated": true, "ani": 79.0776, "matched_fragments": 442, "total_fragments": 886, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Schlegelella thermodepolymerans", "strain": "strain=DSM 15344", "accession": "GCA_015476235.1", "taxid": 215580, "species_taxid": 215580, "relation_to_type": "type", "validated": true, "ani": 77.9843, "matched_fragments": 305, "total_fragments": 886, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azohydromonas lata", "strain": "strain=NBRC 102462", "accession": "GCA_001571085.1", "taxid": 45677, "species_taxid": 45677, "relation_to_type": "type", "validated": true, "ani": 77.915, "matched_fragments": 276, "total_fragments": 886, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hydrogenophaga crocea", "strain": "strain=BA0156", "accession": "GCA_011388215.1", "taxid": 2716225, "species_taxid": 2716225, "relation_to_type": "type", "validated": true, "ani": 77.8384, "matched_fragments": 286, "total_fragments": 886, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ideonella dechloratans", "strain": "strain=CCUG 30977", "accession": "GCA_021049305.1", "taxid": 36863, "species_taxid": 36863, "relation_to_type": "type", "validated": true, "ani": 77.7097, "matched_fragments": 262, "total_fragments": 886, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azohydromonas caseinilytica", "strain": "strain=G-1-1-14", "accession": "GCA_012927045.1", "taxid": 2728836, "species_taxid": 2728836, "relation_to_type": "type", "validated": true, "ani": 77.5739, "matched_fragments": 322, "total_fragments": 886, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ottowia beijingensis", "strain": "strain=GCS-AN-3", "accession": "GCA_013423955.1", "taxid": 1207057, "species_taxid": 1207057, "relation_to_type": "type", "validated": true, "ani": 77.5278, "matched_fragments": 281, "total_fragments": 886, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rubrivivax benzoatilyticus", "strain": "strain=JA2", "accession": "GCA_000190375.2", "taxid": 316997, "species_taxid": 316997, "relation_to_type": "type", "validated": true, "ani": 77.4996, "matched_fragments": 284, "total_fragments": 886, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rubrivivax benzoatilyticus", "strain": "strain=JA2", "accession": "GCA_000420125.1", "taxid": 316997, "species_taxid": 316997, "relation_to_type": "type", "validated": true, "ani": 77.4615, "matched_fragments": 295, "total_fragments": 886, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cupriavidus taiwanensis", "strain": "strain=LMG 19424", "accession": "GCA_000069785.1", "taxid": 164546, "species_taxid": 164546, "relation_to_type": "suspected-type", "validated": true, "ani": 77.4038, "matched_fragments": 256, "total_fragments": 886, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ralstonia pseudosolanacearum", "strain": "strain=LMG 9673", "accession": "GCA_024925465.1", "taxid": 1310165, "species_taxid": 1310165, "relation_to_type": "type", "validated": true, "ani": 77.3894, "matched_fragments": 234, "total_fragments": 886, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rubrivivax gelatinosus", "strain": "strain=DSM 1709", "accession": "GCA_016583525.1", "taxid": 28068, "species_taxid": 28068, "relation_to_type": "suspected-type", "validated": true, "ani": 77.3857, "matched_fragments": 287, "total_fragments": 886, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ralstonia pseudosolanacearum", "strain": "strain=LMG 9673", "accession": "GCA_919586305.1", "taxid": 1310165, "species_taxid": 1310165, "relation_to_type": "type", "validated": true, "ani": 77.3628, "matched_fragments": 234, "total_fragments": 886, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Noviherbaspirillum aridicola", "strain": "strain=NCCP-691", "accession": "GCA_019656455.1", "taxid": 2849687, "species_taxid": 2849687, "relation_to_type": "type", "validated": true, "ani": 77.3378, "matched_fragments": 177, "total_fragments": 886, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter anxifer", "strain": "strain=LMG 26857", "accession": "GCA_903652925.1", "taxid": 1287737, "species_taxid": 1287737, "relation_to_type": "type", "validated": true, "ani": 76.9319, "matched_fragments": 223, "total_fragments": 886, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Candidimonas nitroreducens", "strain": "strain=SC-089", "accession": "GCA_002209565.1", "taxid": 683354, "species_taxid": 683354, "relation_to_type": "type", "validated": true, "ani": 76.9084, "matched_fragments": 172, "total_fragments": 886, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Herbaspirillum camelliae", "strain": "strain=WT00C", "accession": "GCA_001929405.1", "taxid": 1892903, "species_taxid": 1892903, "relation_to_type": "type", "validated": true, "ani": 76.8987, "matched_fragments": 184, "total_fragments": 886, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Herbaspirillum seropedicae", "strain": "strain=Z67", "accession": "GCA_001040945.1", "taxid": 964, "species_taxid": 964, "relation_to_type": "type", "validated": true, "ani": 76.8883, "matched_fragments": 196, "total_fragments": 886, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Herbaspirillum seropedicae", "strain": "strain=Z67", "accession": "GCA_013180375.1", "taxid": 964, "species_taxid": 964, "relation_to_type": "type", "validated": true, "ani": 76.8871, "matched_fragments": 198, "total_fragments": 886, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cupriavidus numazuensis", "strain": "strain=LMG 26411", "accession": "GCA_905397435.1", "taxid": 221992, "species_taxid": 221992, "relation_to_type": "type", "validated": true, "ani": 76.8553, "matched_fragments": 216, "total_fragments": 886, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia agilis", "strain": "strain=JCM 31605", "accession": "GCA_024756255.1", "taxid": 1811226, "species_taxid": 1811226, "relation_to_type": "type", "validated": true, "ani": 76.8153, "matched_fragments": 205, "total_fragments": 886, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Derxia gummosa", "strain": "strain=DSM 723", "accession": "GCA_000482785.1", "taxid": 203699, "species_taxid": 203699, "relation_to_type": "type", "validated": true, "ani": 76.6858, "matched_fragments": 245, "total_fragments": 886, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pandoraea nosoerga", "strain": "strain=LMG 31109", "accession": "GCA_902459585.1", "taxid": 2508296, "species_taxid": 2508296, "relation_to_type": "type", "validated": true, "ani": 76.4723, "matched_fragments": 164, "total_fragments": 886, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 94.44, "contamination": 4.17, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900088825.1", "gtdb_species": "s__Thiomonas delicata", "ani": 98.7993, "matched_fragments": 792, "total_fragments": 886, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Thiomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.68", "min_intra_species_ani": "98.60", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.88", "num_clustered_genomes": 3, "status": "conclusive" }, { "accession": "GCF_900089495.1", "gtdb_species": "s__Thiomonas sp900089495", "ani": 83.2089, "matched_fragments": 666, "total_fragments": 886, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Thiomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_013044035.1", "gtdb_species": "s__Thiomonas sp013044035", "ani": 81.523, "matched_fragments": 560, "total_fragments": 886, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Thiomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000377645.1", "gtdb_species": "s__Thiomonas sp000377645", "ani": 80.2047, "matched_fragments": 489, "total_fragments": 886, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Thiomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.94", "min_intra_species_ani": "96.87", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.90", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_001418255.1", "gtdb_species": "s__Thiomonas bhubaneswarensis", "ani": 79.4065, "matched_fragments": 425, "total_fragments": 886, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Thiomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000733775.1", "gtdb_species": "s__Thiomonas sp000733775", "ani": 78.9997, "matched_fragments": 432, "total_fragments": 886, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Thiomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_019234815.1", "gtdb_species": "s__WAJ17 sp019234815", "ani": 77.4817, "matched_fragments": 213, "total_fragments": 886, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__WAJ17", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000876015.1", "gtdb_species": "s__Cupriavidus basilensis_B", "ani": 77.3951, "matched_fragments": 336, "total_fragments": 886, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Cupriavidus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.55", "min_intra_species_ani": "98.55", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.88", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_002261345.1", "gtdb_species": "s__Bordetella_A sp002261345", "ani": 77.2555, "matched_fragments": 224, "total_fragments": 886, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Bordetella_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.26", "min_intra_species_ani": "99.26", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.94", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_002261335.1", "gtdb_species": "s__Bordetella sp002261335", "ani": 76.9912, "matched_fragments": 227, "total_fragments": 886, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Bordetella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.98", "min_intra_species_ani": "98.98", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.96", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000622895.1", "gtdb_species": "s__AVCC01 sp000622895", "ani": 76.749, "matched_fragments": 113, "total_fragments": 886, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__AVCC01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002261475.1", "gtdb_species": "s__Bordetella sp002261475", "ani": 76.7404, "matched_fragments": 175, "total_fragments": 886, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Bordetella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.06", "min_intra_species_ani": "99.06", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.95", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000482785.1", "gtdb_species": "s__Derxia gummosa", "ani": 76.6761, "matched_fragments": 246, "total_fragments": 886, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Derxia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }