{ "type": "genome", "identifier": "GCA_027483175.1", "organism": "Verrucomicrobiaceae bacterium", "title": "Verrucomicrobiaceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "University of Montreal", "publication": [ {} ], "properties": { "assembly_accession": "GCA_027483175.1", "bioproject": "PRJNA767443", "biosample": "SAMN21888930", "wgs_master": "JAIXVE000000000.1", "refseq_category": "na", "taxid": "2026800", "species_taxid": "2026800", "organism_name": "Verrucomicrobiaceae bacterium", "infraspecific_name": "", "isolate": "D1_MAG_00053", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/12/28", "asm_name": "ASM2748317v1", "submitter": "University of Montreal", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/027/483/175/GCA_027483175.1_ASM2748317v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-12-28", "dateModified": "2022-12-28", "datePublished": "2022-12-28", "_annotation": { "sample_count": 1, "sample_organism": [ "Verrucomicrobiaceae bacterium" ], "sample_taxid": [ "2026800" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Canada: Gault Nature Reserve" ], "sample_host_location_id": [], "data_size": "1.619 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.52, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "5863037", "Number of Sequences": "365", "Longest Sequences (bp)": "90768", "N50 (bp)": "25556", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "63.5", "Number of CDSs": "4087", "Average Protein Length": "383.8", "Coding Ratio (%)": "80.3", "Number of rRNAs": "0", "Number of tRNAs": "44", "Number of CRISPRs": "4" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Akkermansia glycaniphila", "strain": "strain=Pyt", "accession": "GCA_001683795.1", "taxid": 1679444, "species_taxid": 1679444, "relation_to_type": "type", "validated": true, "ani": 75.7895, "matched_fragments": 52, "total_fragments": 1768, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prosthecobacter fusiformis", "strain": "strain=ATCC 25309", "accession": "GCA_004364345.1", "taxid": 48464, "species_taxid": 48464, "relation_to_type": "type", "validated": true, "ani": 75.7368, "matched_fragments": 60, "total_fragments": 1768, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Verrucomicrobium spinosum", "strain": "strain=DSM 4136", "accession": "GCA_000172155.1", "taxid": 2736, "species_taxid": 2736, "relation_to_type": "type", "validated": true, "ani": 75.5731, "matched_fragments": 78, "total_fragments": 1768, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Verrucomicrobium spinosum", "strain": "strain=JCM 18804", "accession": "GCA_001313125.1", "taxid": 2736, "species_taxid": 2736, "relation_to_type": "type", "validated": true, "ani": 75.5713, "matched_fragments": 76, "total_fragments": 1768, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteolibacter yonseiensis", "strain": "strain=JCM 18052", "accession": "GCA_016595465.1", "taxid": 1144680, "species_taxid": 1144680, "relation_to_type": "type", "validated": true, "ani": 75.3524, "matched_fragments": 75, "total_fragments": 1768, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucisphaera calidilacus", "strain": "strain=Pan265", "accession": "GCA_007748075.1", "taxid": 2527982, "species_taxid": 2527982, "relation_to_type": "type", "validated": true, "ani": 74.7334, "matched_fragments": 53, "total_fragments": 1768, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corallococcus aberystwythensis", "strain": "strain=AB050A", "accession": "GCA_003612165.1", "taxid": 2316722, "species_taxid": 2316722, "relation_to_type": "type", "validated": true, "ani": 74.6965, "matched_fragments": 75, "total_fragments": 1768, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corallococcus coralloides", "strain": "strain=DSM 2259", "accession": "GCA_000255295.1", "taxid": 184914, "species_taxid": 184914, "relation_to_type": "type", "validated": true, "ani": 74.6645, "matched_fragments": 79, "total_fragments": 1768, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corallococcus carmarthensis", "strain": "strain=CA043D", "accession": "GCA_003611695.1", "taxid": 2316728, 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