{ "type": "genome", "identifier": "GCA_027486655.1", "organism": "Verrucomicrobiaceae bacterium", "title": "Verrucomicrobiaceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "University of Montreal", "publication": [ {} ], "properties": { "assembly_accession": "GCA_027486655.1", "bioproject": "PRJNA767443", "biosample": "SAMN21888760", "wgs_master": "JAIXOR000000000.1", "refseq_category": "na", "taxid": "2026800", "species_taxid": "2026800", "organism_name": "Verrucomicrobiaceae bacterium", "infraspecific_name": "", "isolate": "C1_MAG_00033", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/12/28", "asm_name": "ASM2748665v1", "submitter": "University of Montreal", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/027/486/655/GCA_027486655.1_ASM2748665v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-12-28", "dateModified": "2022-12-28", "datePublished": "2022-12-28", "_annotation": { "sample_count": 1, "sample_organism": [ "Verrucomicrobiaceae bacterium" ], "sample_taxid": [ "2026800" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Canada: Gault Nature Reserve" ], "sample_host_location_id": [], "data_size": "1.489 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "5331647", "Number of Sequences": "87", "Longest Sequences (bp)": "232660", "N50 (bp)": "111034", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "62.4", "Number of CDSs": "3934", "Average Protein Length": "402.4", "Coding Ratio (%)": "89.1", "Number of rRNAs": "0", "Number of tRNAs": "49", "Number of CRISPRs": "5" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Luteolibacter yonseiensis", "strain": "strain=JCM 18052", "accession": "GCA_016595465.1", "taxid": 1144680, "species_taxid": 1144680, "relation_to_type": "type", "validated": true, "ani": 78.5295, "matched_fragments": 418, "total_fragments": 1735, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteolibacter ambystomatis", "strain": "strain=32A", "accession": "GCA_018137965.1", "taxid": 2824561, "species_taxid": 2824561, "relation_to_type": "type", "validated": true, "ani": 78.0295, "matched_fragments": 347, "total_fragments": 1735, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteolibacter luteus", "strain": "strain=G-1-1-1", "accession": "GCA_012913485.1", "taxid": 2728835, "species_taxid": 2728835, "relation_to_type": "type", "validated": true, "ani": 77.5404, "matched_fragments": 247, "total_fragments": 1735, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Haloferula rosea", "strain": "strain=KCTC 22201", "accession": "GCA_016595525.1", "taxid": 490093, "species_taxid": 490093, "relation_to_type": "type", "validated": true, "ani": 77.4041, "matched_fragments": 168, "total_fragments": 1735, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteolibacter pohnpeiensis", "strain": "strain=KCTC 22041", "accession": "GCA_016595435.1", "taxid": 454153, "species_taxid": 454153, "relation_to_type": "type", "validated": true, "ani": 76.9979, "matched_fragments": 167, "total_fragments": 1735, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prosthecobacter debontii", "strain": "strain=ATCC 700200", "accession": "GCA_900167535.1", "taxid": 48467, "species_taxid": 48467, "relation_to_type": "type", "validated": true, "ani": 76.3763, "matched_fragments": 59, "total_fragments": 1735, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Akkermansia glycaniphila", "strain": "strain=Pyt", "accession": "GCA_001683795.1", "taxid": 1679444, "species_taxid": 1679444, "relation_to_type": "type", "validated": true, "ani": 76.1981, "matched_fragments": 62, "total_fragments": 1735, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Verrucomicrobium spinosum", "strain": "strain=DSM 4136", "accession": "GCA_000172155.1", "taxid": 2736, "species_taxid": 2736, "relation_to_type": "type", "validated": true, "ani": 75.8354, "matched_fragments": 81, "total_fragments": 1735, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseimicrobium gellanilyticum", "strain": "strain=DSM 25532", "accession": "GCA_003315205.1", "taxid": 748857, "species_taxid": 748857, "relation_to_type": "type", "validated": true, "ani": 75.603, "matched_fragments": 91, "total_fragments": 1735, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_003820635.1", "gtdb_species": "s__Luteolibacter sp003820635", "ani": 80.3052, "matched_fragments": 447, "total_fragments": 1735, "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Verrucomicrobiales;f__Akkermansiaceae;g__Luteolibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903919975.1", "gtdb_species": "s__Luteolibacter sp903919975", "ani": 78.6575, "matched_fragments": 377, "total_fragments": 1735, "gtdb_taxonomy": 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