{ "type": "genome", "identifier": "GCA_027592345.1", "organism": "Actinomycetota bacterium", "title": "Actinomycetota bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "University of Tehran", "publication": [ {} ], "properties": { "assembly_accession": "GCA_027592345.1", "bioproject": "PRJNA279271", "biosample": "SAMN32185618", "wgs_master": "JAQCKP000000000.1", "refseq_category": "na", "taxid": "2900548", "species_taxid": "2900548", "organism_name": "Actinomycetota bacterium", "infraspecific_name": "", "isolate": "casp40-mb.75", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/01/08", "asm_name": "ASM2759234v1", "submitter": "University of Tehran", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/027/592/345/GCA_027592345.1_ASM2759234v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-01-08", "dateModified": "2023-01-08", "datePublished": "2023-01-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Actinomycetota bacterium" ], "sample_taxid": [ "2900548" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Iran: Caspian Sea near Babolsar" ], "sample_host_location_id": [], "data_size": "1.114 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 0.46, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4017991", "Number of Sequences": "285", "Longest Sequences (bp)": "87243", "N50 (bp)": "23703", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "67.6", "Number of CDSs": "3705", "Average Protein Length": "309.2", "Coding Ratio (%)": "85.5", "Number of rRNAs": "1", "Number of tRNAs": "48", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Candidatus Mycolicibacterium alkanivorans", "strain": "", "accession": "GCA_022760805.1", "taxid": 2954114, "species_taxid": 2954114, "relation_to_type": "type", "validated": true, "ani": 80.3567, "matched_fragments": 574, "total_fragments": 1193, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium anyangense", "strain": "strain=JCM 30275", "accession": "GCA_010731855.1", "taxid": 1431246, "species_taxid": 1431246, "relation_to_type": "type", "validated": true, "ani": 80.0012, "matched_fragments": 662, "total_fragments": 1193, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium fallax", "strain": "strain=DSM 44179", "accession": "GCA_002101995.1", "taxid": 1793, "species_taxid": 1793, "relation_to_type": "type", "validated": true, "ani": 79.6367, "matched_fragments": 534, "total_fragments": 1193, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium fallax", "strain": "strain=JCM 6405", "accession": "GCA_010726955.1", "taxid": 1793, "species_taxid": 1793, "relation_to_type": "type", "validated": true, "ani": 79.617, "matched_fragments": 536, "total_fragments": 1193, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium rhodesiae", "strain": "strain=DSM 44223", "accession": "GCA_002086695.1", "taxid": 36814, "species_taxid": 36814, "relation_to_type": "type", "validated": true, "ani": 79.5792, "matched_fragments": 614, "total_fragments": 1193, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium crocinum", "strain": "strain=JCM 16369", "accession": "GCA_022370635.3", "taxid": 388459, "species_taxid": 388459, "relation_to_type": "type", "validated": true, "ani": 79.497, "matched_fragments": 621, "total_fragments": 1193, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium phlei", "strain": "strain=DSM 43239 = CCUG 21000", "accession": "GCA_001582015.1", "taxid": 1771, "species_taxid": 1771, "relation_to_type": "type", "validated": true, "ani": 79.4826, "matched_fragments": 566, "total_fragments": 1193, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium pallens", "strain": "strain=JCM 16370", "accession": "GCA_019456675.1", "taxid": 370524, "species_taxid": 370524, "relation_to_type": "type", "validated": true, "ani": 79.4633, "matched_fragments": 618, "total_fragments": 1193, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium phlei", "strain": "strain=CCUG 21000", "accession": "GCA_001583415.1", "taxid": 1771, "species_taxid": 1771, "relation_to_type": "type", "validated": true, "ani": 79.4264, "matched_fragments": 573, "total_fragments": 1193, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium aichiense", "strain": "strain=NCTC10820", "accession": "GCA_900453085.1", "taxid": 1799, "species_taxid": 1799, "relation_to_type": "type", "validated": true, "ani": 79.3589, "matched_fragments": 635, "total_fragments": 1193, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium aromaticivorans", "strain": "strain=JS19b1", "accession": "GCA_000559085.2", "taxid": 318425, "species_taxid": 318425, "relation_to_type": "type", "validated": true, "ani": 79.3036, "matched_fragments": 620, "total_fragments": 1193, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium palauense", "strain": "strain=CECT 8779", "accession": "GCA_002592005.1", "taxid": 2034511, "species_taxid": 2034511, "relation_to_type": "type", "validated": true, "ani": 79.296, "matched_fragments": 589, "total_fragments": 1193, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium litorale", "strain": "strain=CGMCC 4.5724", "accession": "GCA_004366555.1", "taxid": 758802, "species_taxid": 758802, "relation_to_type": "type", "validated": true, "ani": 79.1003, "matched_fragments": 529, "total_fragments": 1193, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium helvum", "strain": "strain=JCM 30396", "accession": "GCA_010731895.1", "taxid": 1534349, "species_taxid": 1534349, "relation_to_type": "type", "validated": true, "ani": 79.0956, "matched_fragments": 615, "total_fragments": 1193, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium canariasense", "strain": "strain=JCM15298", "accession": "GCA_001570445.1", "taxid": 228230, "species_taxid": 228230, "relation_to_type": "type", "validated": true, "ani": 79.0884, "matched_fragments": 519, "total_fragments": 1193, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium canariasense", "strain": "strain=CCUG 47953", "accession": "GCA_002101555.1", "taxid": 228230, "species_taxid": 228230, "relation_to_type": "type", "validated": true, "ani": 79.0678, "matched_fragments": 523, "total_fragments": 1193, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium litorale", "strain": "strain=JCM 17423", "accession": "GCA_010731695.1", "taxid": 758802, "species_taxid": 758802, "relation_to_type": "type", "validated": true, "ani": 79.0442, "matched_fragments": 538, "total_fragments": 1193, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium bacteremicum", "strain": "strain=DSM 45578", "accession": "GCA_002086115.1", "taxid": 564198, "species_taxid": 564198, "relation_to_type": "type", "validated": true, "ani": 78.9942, "matched_fragments": 519, "total_fragments": 1193, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacter senuensis", "strain": "strain=DSM 44999", "accession": "GCA_002101885.1", "taxid": 386913, "species_taxid": 386913, "relation_to_type": "type", "validated": true, "ani": 78.8204, "matched_fragments": 489, "total_fragments": 1193, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium baixiangningiae", "strain": "strain=LJ126", "accession": "GCA_014893035.1", "taxid": 2761578, "species_taxid": 2761578, "relation_to_type": "type", "validated": true, "ani": 78.7283, "matched_fragments": 514, "total_fragments": 1193, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacter engbaekii", "strain": "strain=ATCC 27353", "accession": "GCA_002101585.1", "taxid": 188915, "species_taxid": 188915, "relation_to_type": "type", "validated": true, "ani": 78.6964, "matched_fragments": 436, "total_fragments": 1193, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium baixiangningiae", "strain": "strain=LJ126", "accession": "GCA_016313185.1", "taxid": 2761578, "species_taxid": 2761578, "relation_to_type": "type", "validated": true, "ani": 78.6844, "matched_fragments": 517, "total_fragments": 1193, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium phocaicum", "strain": "strain=JCM 15301", "accession": "GCA_010731115.1", "taxid": 319706, "species_taxid": 319706, "relation_to_type": "type", "validated": true, "ani": 78.6124, "matched_fragments": 475, "total_fragments": 1193, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium neoaurum", "strain": "strain=DSM 44074", "accession": "GCA_005670605.1", "taxid": 1795, "species_taxid": 1795, "relation_to_type": "type", "validated": true, "ani": 78.547, "matched_fragments": 460, "total_fragments": 1193, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacter arupensis", "strain": "strain=DSM 44942", "accession": "GCA_002086515.1", "taxid": 342002, "species_taxid": 342002, "relation_to_type": "type", "validated": true, "ani": 78.4505, "matched_fragments": 398, "total_fragments": 1193, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium mengxianglii", "strain": "strain=Z-34", "accession": "GCA_015710575.2", "taxid": 2736649, "species_taxid": 2736649, "relation_to_type": "type", "validated": true, "ani": 78.4488, "matched_fragments": 469, "total_fragments": 1193, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium aubagnense", "strain": "strain=DSM 45150", "accession": "GCA_005670695.1", "taxid": 319707, "species_taxid": 319707, "relation_to_type": "type", "validated": true, "ani": 78.3587, "matched_fragments": 477, "total_fragments": 1193, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia asteroides", "strain": "strain=ATCC 19247", "accession": "GCA_005863255.1", "taxid": 1824, "species_taxid": 1824, "relation_to_type": "suspected-type", "validated": true, "ani": 77.2634, "matched_fragments": 320, "total_fragments": 1193, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia asteroides", "strain": "strain=NBRC 15531", "accession": "GCA_000308355.2", "taxid": 1824, "species_taxid": 1824, "relation_to_type": "suspected-type", "validated": true, "ani": 77.2433, "matched_fragments": 323, "total_fragments": 1193, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia asteroides", "strain": "strain=DSM 43373", "accession": "GCA_900114685.1", "taxid": 1824, "species_taxid": 1824, "relation_to_type": "suspected-type", "validated": true, "ani": 77.2271, "matched_fragments": 324, "total_fragments": 1193, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia asteroides", "strain": "strain=NCTC11293", "accession": "GCA_900637185.1", "taxid": 1824, "species_taxid": 1824, "relation_to_type": "suspected-type", "validated": true, "ani": 77.2126, "matched_fragments": 332, "total_fragments": 1193, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia harenae", "strain": "strain=NBRC 108248", "accession": "GCA_001612885.1", "taxid": 358707, "species_taxid": 358707, "relation_to_type": "type", "validated": true, "ani": 77.0406, "matched_fragments": 331, "total_fragments": 1193, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 95.83, "contamination": 0.46, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_001510415.1", "gtdb_species": "s__Mycobacterium sp001510415", "ani": 99.5372, "matched_fragments": 585, "total_fragments": 1193, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", 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"status": "-" }, { "accession": "GCA_018882965.1", "gtdb_species": "s__Mycobacterium sp018882965", "ani": 80.0124, "matched_fragments": 629, "total_fragments": 1193, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001886515.1", "gtdb_species": "s__Mycobacterium sp001886515", "ani": 79.5004, "matched_fragments": 622, "total_fragments": 1193, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.54", "min_intra_species_ani": "98.54", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.94", "num_clustered_genomes": 2, "status": "-" }, { 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