{ "type": "genome", "identifier": "GCA_027621815.1", "organism": "Cyanobacteriota bacterium", "title": "Cyanobacteriota bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "University of Tehran", "publication": [ {} ], "properties": { "assembly_accession": "GCA_027621815.1", "bioproject": "PRJNA279271", "biosample": "SAMN32185362", "wgs_master": "JAQCAT000000000.1", "refseq_category": "na", "taxid": "2847862", "species_taxid": "2847862", "organism_name": "Cyanobacteriota bacterium", "infraspecific_name": "", "isolate": "casp15-mb.115", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/01/09", "asm_name": "ASM2762181v1", "submitter": "University of Tehran", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/027/621/815/GCA_027621815.1_ASM2762181v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-01-09", "dateModified": "2023-01-09", "datePublished": "2023-01-09", "_annotation": { "sample_count": 1, "sample_organism": [ "Cyanobacteriota bacterium" ], "sample_taxid": [ "2847862" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Iran: Caspian Sea near Babolsar" ], "sample_host_location_id": [], "data_size": "0.443 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 81.02, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1570365", "Number of Sequences": "258", "Longest Sequences (bp)": "26274", "N50 (bp)": "6789", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "64.4", "Number of CDSs": "1547", "Average Protein Length": "251.8", "Coding Ratio (%)": "74.4", "Number of rRNAs": "0", "Number of tRNAs": "28", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Parasynechococcus marenigrum", "strain": "strain=WH 8102", "accession": "GCA_000195975.1", "taxid": 2881428, "species_taxid": 2881428, "relation_to_type": "type", "validated": true, "ani": 78.256, "matched_fragments": 133, "total_fragments": 392, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 81.02, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000179255.1", "gtdb_species": "s__Vulcanococcus sp000179255", "ani": 98.0095, "matched_fragments": 376, "total_fragments": 392, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__PCC-6307;f__Cyanobiaceae;g__Vulcanococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.12", "min_intra_species_ani": "97.13", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.88", "num_clustered_genomes": 14, "status": "conclusive" }, { "accession": "GCF_014217875.1", "gtdb_species": "s__Vulcanococcus sp014217875", "ani": 86.7083, "matched_fragments": 371, "total_fragments": 392, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__PCC-6307;f__Cyanobiaceae;g__Vulcanococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_018623875.1", "gtdb_species": "s__Vulcanococcus sp018623875", "ani": 85.8246, "matched_fragments": 302, "total_fragments": 392, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__PCC-6307;f__Cyanobiaceae;g__Vulcanococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_014191535.1", "gtdb_species": "s__Vulcanococcus sp014191535", "ani": 81.6154, "matched_fragments": 193, "total_fragments": 392, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__PCC-6307;f__Cyanobiaceae;g__Vulcanococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_019104765.1", "gtdb_species": "s__Vulcanococcus sp019104765", "ani": 81.4664, "matched_fragments": 267, "total_fragments": 392, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__PCC-6307;f__Cyanobiaceae;g__Vulcanococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016882485.1", "gtdb_species": "s__Vulcanococcus sp016882485", "ani": 81.3257, "matched_fragments": 255, "total_fragments": 392, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__PCC-6307;f__Cyanobiaceae;g__Vulcanococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000179235.2", "gtdb_species": "s__Vulcanococcus sp000179235", "ani": 81.3093, "matched_fragments": 281, "total_fragments": 392, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__PCC-6307;f__Cyanobiaceae;g__Vulcanococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016882585.1", "gtdb_species": "s__Vulcanococcus sp016882585", "ani": 81.1105, "matched_fragments": 197, "total_fragments": 392, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__PCC-6307;f__Cyanobiaceae;g__Vulcanococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_014654725.1", "gtdb_species": "s__Vulcanococcus sp014654725", "ani": 81.0574, "matched_fragments": 276, "total_fragments": 392, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__PCC-6307;f__Cyanobiaceae;g__Vulcanococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_009926195.1", "gtdb_species": "s__Vulcanococcus sp009926195", "ani": 80.7101, "matched_fragments": 192, "total_fragments": 392, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__PCC-6307;f__Cyanobiaceae;g__Vulcanococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_010029175.1", "gtdb_species": "s__Vulcanococcus sp010029175", "ani": 79.8888, "matched_fragments": 207, "total_fragments": 392, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__PCC-6307;f__Cyanobiaceae;g__Vulcanococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_gtdb_taxon": [ "d__Bacteria", "p__Cyanobacteriota", "c__Cyanobacteriia", "o__PCC-6307", "f__Cyanobiaceae", "g__Vulcanococcus", "s__Vulcanococcus sp000179255" ], "_genome_taxon": [ "Cyanobacteriota", "bacterium", "d__Bacteria", "p__Cyanobacteriota", "c__Cyanobacteriia", "o__PCC-6307", "f__Cyanobiaceae", "g__Vulcanococcus", "s__Vulcanococcus sp000179255", "Bacteria", "Cyanobacteriota", "Cyanobacteriia", "PCC-6307", "Cyanobiaceae", "Vulcanococcus", "Vulcanococcus", "sp000179255" ], "_meo": [ { "id": "MEO_0000087", "label": "estuary" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }