{ "type": "genome", "identifier": "GCA_028063585.1", "organism": "Actinomycetota bacterium", "title": "Actinomycetota bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "South china normal university", "publication": [ {} ], "properties": { "assembly_accession": "GCA_028063585.1", "bioproject": "PRJNA830440", "biosample": "SAMN27723855", "wgs_master": "JAPTYA000000000.1", "refseq_category": "na", "taxid": "2900548", "species_taxid": "2900548", "organism_name": "Actinomycetota bacterium", "infraspecific_name": "", "isolate": "ZHJ.bin2", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/01/26", "asm_name": "ASM2806358v1", "submitter": "South china normal university", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/028/063/585/GCA_028063585.1_ASM2806358v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-01-26", "dateModified": "2023-01-26", "datePublished": "2023-01-26", "_annotation": { "sample_count": 1, "sample_organism": [ "Actinomycetota bacterium" ], "sample_taxid": [ "2900548" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Zhijin, Guizhou Province" ], "sample_host_location_id": [], "data_size": "0.873 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 99.62, "contamination": 0.9, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3301887", "Number of Sequences": "352", "Longest Sequences (bp)": "63713", "N50 (bp)": "12607", "Gap Ratio (%)": "0.001211", "GCcontent (%)": "74.2", "Number of CDSs": "2781", "Average Protein Length": "321.3", "Coding Ratio (%)": "81.2", "Number of rRNAs": "0", "Number of tRNAs": "47", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Rhabdothermincola sediminis", "strain": "strain=SYSU G02662", "accession": "GCA_014805525.1", "taxid": 2751370, "species_taxid": 2751370, "relation_to_type": "type", "validated": true, "ani": 76.2687, "matched_fragments": 137, "total_fragments": 925, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomarinicola tropica", "strain": "strain=SCSIO 58843", "accession": "GCA_009650215.1", "taxid": 2789776, "species_taxid": 2789776, "relation_to_type": "type", "validated": true, "ani": 76.2646, "matched_fragments": 244, "total_fragments": 925, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhabdothermincola salaria", "strain": "strain=EGI L10124", "accession": "GCA_021246445.1", "taxid": 2903142, "species_taxid": 2903142, "relation_to_type": "type", "validated": true, "ani": 76.0257, "matched_fragments": 230, "total_fragments": 925, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desertimonas flava", "strain": "strain=SYSU D60003", "accession": "GCA_003426815.1", "taxid": 2064846, "species_taxid": 2064846, "relation_to_type": "type", "validated": true, "ani": 75.6656, "matched_fragments": 250, "total_fragments": 925, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ilumatobacter fluminis", "strain": "strain=DSM 18936", "accession": "GCA_004364865.1", "taxid": 467091, "species_taxid": 467091, "relation_to_type": "type", "validated": true, "ani": 75.5722, "matched_fragments": 170, "total_fragments": 925, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Motilibacter aurantiacus", "strain": "strain=K478", "accession": "GCA_011250645.1", "taxid": 2714955, "species_taxid": 2714955, "relation_to_type": "type", "validated": true, "ani": 75.3676, "matched_fragments": 213, "total_fragments": 925, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides guangzhouensis", "strain": "strain=130", "accession": "GCA_004519545.1", "taxid": 2497878, "species_taxid": 2497878, "relation_to_type": "type", "validated": true, "ani": 75.3363, "matched_fragments": 188, "total_fragments": 925, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tessaracoccus bendigoensis", "strain": "strain=DSM 12906", "accession": "GCA_900141915.1", "taxid": 72764, "species_taxid": 72764, "relation_to_type": "type", "validated": true, "ani": 75.3345, "matched_fragments": 62, "total_fragments": 925, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salsipaludibacter albus", "strain": "strain=AS10", "accession": "GCA_019798055.1", "taxid": 2849650, "species_taxid": 2849650, "relation_to_type": "type", "validated": true, "ani": 75.3176, "matched_fragments": 149, "total_fragments": 925, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desertihabitans brevis", "strain": "strain=16Sb5-5", "accession": "GCA_003327535.1", "taxid": 2268447, "species_taxid": 2268447, "relation_to_type": "type", "validated": true, "ani": 75.2596, "matched_fragments": 181, "total_fragments": 925, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides allogilvus", "strain": "strain=KCTC 49020", "accession": "GCA_003047285.1", "taxid": 2072017, "species_taxid": 2072017, "relation_to_type": "type", "validated": true, "ani": 75.2394, "matched_fragments": 142, "total_fragments": 925, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas iranensis", "strain": "strain=NBRC 101100", "accession": "GCA_001552375.1", "taxid": 76862, "species_taxid": 76862, "relation_to_type": "type", "validated": true, "ani": 75.2226, "matched_fragments": 176, "total_fragments": 925, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Auraticoccus monumenti", "strain": "strain=MON 2.2", "accession": "GCA_900101785.1", "taxid": 675864, "species_taxid": 675864, "relation_to_type": "type", "validated": true, "ani": 75.2162, "matched_fragments": 189, "total_fragments": 925, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudonocardia sediminis", "strain": "strain=DSM 45779", "accession": "GCA_004217185.1", "taxid": 1397368, "species_taxid": 1397368, "relation_to_type": "type", "validated": true, "ani": 75.1503, "matched_fragments": 236, "total_fragments": 925, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces decoyicus", "strain": "strain=NRRL 2666", "accession": "GCA_001270575.1", "taxid": 249567, "species_taxid": 249567, "relation_to_type": "type", "validated": true, "ani": 75.0948, "matched_fragments": 188, "total_fragments": 925, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea typhae", "strain": "strain=p1410", "accession": "GCA_009760925.1", "taxid": 2603600, "species_taxid": 2603600, "relation_to_type": "type", "validated": true, "ani": 75.072, "matched_fragments": 272, "total_fragments": 925, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis tolypomycina", "strain": "strain=DSM 44544", "accession": "GCA_900105945.1", "taxid": 208445, "species_taxid": 208445, "relation_to_type": "type", "validated": true, "ani": 75.0164, "matched_fragments": 274, "total_fragments": 925, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis kentuckyensis", "strain": "strain=NRRL B-24129", "accession": "GCA_002155975.1", "taxid": 218823, "species_taxid": 218823, "relation_to_type": "type", "validated": true, "ani": 74.9664, "matched_fragments": 249, "total_fragments": 925, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium crusticola", "strain": "strain=MIMD6", "accession": "GCA_003574465.1", "taxid": 1697972, "species_taxid": 1697972, "relation_to_type": "type", "validated": true, "ani": 74.9209, "matched_fragments": 248, "total_fragments": 925, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Falsiroseomonas tokyonensis", "strain": "strain=K-20", "accession": "GCA_019024325.1", "taxid": 430521, "species_taxid": 430521, "relation_to_type": "type", "validated": true, "ani": 74.7738, "matched_fragments": 118, "total_fragments": 925, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 99.62, "contamination": 0.9, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCA_003159795.1", "gtdb_species": "s__Bog-793 sp003159795", "ani": 77.487, "matched_fragments": 169, "total_fragments": 925, "gtdb_taxonomy": 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