{
    "type": "genome",
    "identifier": "GCA_028065415.1",
    "organism": "Gammaproteobacteria bacterium",
    "title": "Gammaproteobacteria bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "South china normal university",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_028065415.1",
        "bioproject": "PRJNA830440",
        "biosample": "SAMN27723803",
        "wgs_master": "JAPTWA000000000.1",
        "refseq_category": "na",
        "taxid": "1913989",
        "species_taxid": "1913989",
        "organism_name": "Gammaproteobacteria bacterium",
        "infraspecific_name": "",
        "isolate": "TLI.bin6",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2023/01/26",
        "asm_name": "ASM2806541v1",
        "submitter": "South china normal university",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/028/065/415/GCA_028065415.1_ASM2806541v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2023-01-26",
    "dateModified": "2023-01-26",
    "datePublished": "2023-01-26",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Gammaproteobacteria bacterium"
        ],
        "sample_taxid": [
            "1913989"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China: Tongling, Anhui Province"
        ],
        "sample_host_location_id": [],
        "data_size": "0.703 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 85.42,
        "contamination": 4.17,
        "strain_heterogeneity": 100.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2472736",
        "Number of Sequences": "385",
        "Longest Sequences (bp)": "23824",
        "N50 (bp)": "7615",
        "Gap Ratio (%)": "0.042867",
        "GCcontent (%)": "63.3",
        "Number of CDSs": "2176",
        "Average Protein Length": "275.0",
        "Coding Ratio (%)": "72.6",
        "Number of rRNAs": "0",
        "Number of tRNAs": "25",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Acidiferrobacter thiooxydans",
                "strain": "strain=m-1",
                "accession": "GCA_003333315.1",
                "taxid": 163359,
                "species_taxid": 163359,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 479,
                "total_fragments": 636,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Sulfurifustis variabilis",
                "strain": "strain=skN76",
                "accession": "GCA_002355415.1",
                "taxid": 1675686,
                "species_taxid": 1675686,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.2063,
                "matched_fragments": 56,
                "total_fragments": 636,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Marichromatium gracile",
                "strain": "strain=DSM 203",
                "accession": "GCA_004343155.1",
                "taxid": 1048,
                "species_taxid": 1048,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.9177,
                "matched_fragments": 55,
                "total_fragments": 636,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Marichromatium gracile",
                "strain": "strain=DSM 203",
                "accession": "GCA_016583515.1",
                "taxid": 1048,
                "species_taxid": 1048,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.8931,
                "matched_fragments": 56,
                "total_fragments": 636,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Inmirania thermothiophila",
                "strain": "strain=DSM 100275",
                "accession": "GCA_003751635.1",
                "taxid": 1750597,
                "species_taxid": 1750597,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.6194,
                "matched_fragments": 59,
                "total_fragments": 636,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 85.42,
            "contamination": 4.17,
            "strain_heterogeneity": 100.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_003333315.1",
                "gtdb_species": "s__Acidiferrobacter thiooxydans",
                "ani": 98.0037,
                "matched_fragments": 478,
                "total_fragments": 636,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Acidiferrobacterales;f__Acidiferrobacteraceae;g__Acidiferrobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.34",
                "min_intra_species_ani": "99.34",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCF_003184265.1",
                "gtdb_species": "s__Acidiferrobacter sp003184265",
                "ani": 91.5793,
                "matched_fragments": 454,
                "total_fragments": 636,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Acidiferrobacterales;f__Acidiferrobacteraceae;g__Acidiferrobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016218345.1",
                "gtdb_species": "s__JACREH01 sp016218345",
                "ani": 76.6064,
                "matched_fragments": 58,
                "total_fragments": 636,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Acidiferrobacterales;f__UBA6901;g__JACREH01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_001785175.1",
                "gtdb_species": "s__MFSY01 sp001785175",
                "ani": 76.428,
                "matched_fragments": 53,
                "total_fragments": 636,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Acidiferrobacterales;f__Sulfurifustaceae;g__MFSY01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.98",
                "min_intra_species_ani": "97.98",
                "mean_intra_species_af": "0.76",
                "min_intra_species_af": "0.76",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_001785115.1",
                "gtdb_species": "s__RBG-16-65-34 sp001785115",
                "ani": 76.1883,
                "matched_fragments": 50,
                "total_fragments": 636,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Acidiferrobacterales;f__Sulfurifustaceae;g__RBG-16-65-34",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002355415.1",
                "gtdb_species": "s__Sulfurifustis variabilis",
                "ani": 76.1814,
                "matched_fragments": 57,
                "total_fragments": 636,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Acidiferrobacterales;f__Sulfurifustaceae;g__Sulfurifustis",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003751635.1",
                "gtdb_species": "s__Inmirania thermothiophila",
                "ani": 75.5621,
                "matched_fragments": 62,
                "total_fragments": 636,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__DSM-100275;f__DSM-100275;g__Inmirania",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Acidiferrobacterales",
        "f__Acidiferrobacteraceae",
        "g__Acidiferrobacter",
        "s__Acidiferrobacter thiooxydans"
    ],
    "_genome_taxon": [
        "Gammaproteobacteria",
        "bacterium",
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Acidiferrobacterales",
        "f__Acidiferrobacteraceae",
        "g__Acidiferrobacter",
        "s__Acidiferrobacter thiooxydans",
        "Bacteria",
        "Pseudomonadota",
        "Gammaproteobacteria",
        "Acidiferrobacterales",
        "Acidiferrobacteraceae",
        "Acidiferrobacter",
        "Acidiferrobacter",
        "thiooxydans"
    ],
    "_meo": [
        {
            "id": "MEO_0000034",
            "label": "acid mine drainage"
        },
        {
            "id": "MEO_0000066",
            "label": "sediment"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}