{
    "type": "genome",
    "identifier": "GCA_028279005.1",
    "organism": "Candidatus Spongiisocius variivorans",
    "title": "Candidatus Spongiisocius variivorans",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "Australian Institute of Marine Science",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_028279005.1",
        "bioproject": "PRJNA588103",
        "biosample": "SAMN31047461",
        "wgs_master": "JAPYNS000000000.1",
        "refseq_category": "na",
        "taxid": "2983164",
        "species_taxid": "2983164",
        "organism_name": "Candidatus Spongiisocius variivorans",
        "infraspecific_name": "",
        "isolate": "m_rhze10",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2023/01/30",
        "asm_name": "ASM2827900v1",
        "submitter": "Australian Institute of Marine Science",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/028/279/005/GCA_028279005.1_ASM2827900v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2023-01-30",
    "dateModified": "2023-01-30",
    "datePublished": "2023-01-30",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Candidatus Spongiisocius variivorans"
        ],
        "sample_taxid": [
            "2983164"
        ],
        "sample_host_organism": [
            "Rhopaloeides odorabile"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Australia: Davies Reef, Great Barrier Reef"
        ],
        "sample_host_location_id": [],
        "data_size": "0.726 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.38,
        "strain_heterogeneity": 100.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2595325",
        "Number of Sequences": "443",
        "Longest Sequences (bp)": "31777",
        "N50 (bp)": "6607",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "66.2",
        "Number of CDSs": "2087",
        "Average Protein Length": "298.6",
        "Coding Ratio (%)": "72.0",
        "Number of rRNAs": "3",
        "Number of tRNAs": "38",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Phytohabitans rumicis",
                "strain": "strain=NBRC 108638",
                "accession": "GCA_011764445.1",
                "taxid": 1076125,
                "species_taxid": 1076125,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.2285,
                "matched_fragments": 54,
                "total_fragments": 642,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinoplanes nipponensis",
                "strain": "strain=NBRC 14063",
                "accession": "GCA_016862275.1",
                "taxid": 135950,
                "species_taxid": 135950,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.2256,
                "matched_fragments": 62,
                "total_fragments": 642,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinokineospora bangkokensis",
                "strain": "strain=44EHW",
                "accession": "GCA_001940455.1",
                "taxid": 1193682,
                "species_taxid": 1193682,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.201,
                "matched_fragments": 67,
                "total_fragments": 642,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Micromonospora craterilacus",
                "strain": "strain=NA12",
                "accession": "GCA_003236315.1",
                "taxid": 1655439,
                "species_taxid": 1655439,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.1968,
                "matched_fragments": 62,
                "total_fragments": 642,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinoplanes atraurantiacus",
                "strain": "strain=CGMCC 4.6857",
                "accession": "GCA_900215205.1",
                "taxid": 1036182,
                "species_taxid": 1036182,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.907,
                "matched_fragments": 69,
                "total_fragments": 642,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinoplanes toevensis",
                "strain": "strain=NBRC 105298",
                "accession": "GCA_018332695.1",
                "taxid": 571911,
                "species_taxid": 571911,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.8925,
                "matched_fragments": 54,
                "total_fragments": 642,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinoplanes tereljensis",
                "strain": "strain=NBRC 105297",
                "accession": "GCA_016862435.1",
                "taxid": 571912,
                "species_taxid": 571912,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.8465,
                "matched_fragments": 64,
                "total_fragments": 642,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.38,
            "strain_heterogeneity": 100.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_009841105.1",
                "gtdb_species": "s__VXMP01 sp009841105",
                "ani": 97.189,
                "matched_fragments": 558,
                "total_fragments": 642,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__UBA5794;f__SZUA-232;g__VXMP01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.74",
                "min_intra_species_ani": "98.68",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 3,
                "status": "conclusive"
            },
            {
                "accession": "GCA_011523635.1",
                "gtdb_species": "s__VXMP01 sp011523635",
                "ani": 88.1653,
                "matched_fragments": 525,
                "total_fragments": 642,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__UBA5794;f__SZUA-232;g__VXMP01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_009838635.1",
                "gtdb_species": "s__VXMP01 sp009838635",
                "ani": 87.7423,
                "matched_fragments": 470,
                "total_fragments": 642,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__UBA5794;f__SZUA-232;g__VXMP01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.78",
                "min_intra_species_ani": "99.78",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_011523395.1",
                "gtdb_species": "s__VXMP01 sp011523395",
                "ani": 87.5594,
                "matched_fragments": 452,
                "total_fragments": 642,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__UBA5794;f__SZUA-232;g__VXMP01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_009841075.1",
                "gtdb_species": "s__VXMP01 sp009841075",
                "ani": 78.1213,
                "matched_fragments": 157,
                "total_fragments": 642,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__UBA5794;f__SZUA-232;g__VXMP01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.09",
                "min_intra_species_ani": "98.96",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 4,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Actinomycetota",
        "c__Acidimicrobiia",
        "o__UBA5794",
        "f__Spongiisociaceae",
        "g__Spongiisocius",
        "s__Spongiisocius variivorans"
    ],
    "_genome_taxon": [
        "Candidatus",
        "Spongiisocius",
        "variivorans",
        "d__Bacteria",
        "p__Actinomycetota",
        "c__Acidimicrobiia",
        "o__UBA5794",
        "f__Spongiisociaceae",
        "g__Spongiisocius",
        "s__Spongiisocius variivorans",
        "Bacteria",
        "Actinomycetota",
        "Acidimicrobiia",
        "UBA5794",
        "Spongiisociaceae",
        "Spongiisocius",
        "Spongiisocius",
        "variivorans"
    ],
    "_meo": [
        {
            "id": "MEO_0002677",
            "label": "sponge"
        }
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}