{ "type": "genome", "identifier": "GCA_028287005.1", "organism": "Myxococcaceae bacterium", "title": "Myxococcaceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Colorado State University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_028287005.1", "bioproject": "PRJNA682830", "biosample": "SAMN17837461", "wgs_master": "JAQBQM000000000.1", "refseq_category": "na", "taxid": "2484252", "species_taxid": "2484252", "organism_name": "Myxococcaceae bacterium", "infraspecific_name": "", "isolate": "RYN_373", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/01/30", "asm_name": "ASM2828700v1", "submitter": "Colorado State University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/028/287/005/GCA_028287005.1_ASM2828700v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-01-30", "dateModified": "2023-01-30", "datePublished": "2023-01-30", "_annotation": { "sample_count": 1, "sample_organism": [ "Myxococcaceae bacterium" ], "sample_taxid": [ "2484252" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA:Wyoming" ], "sample_host_location_id": [], "data_size": "1.980 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 60.8, "contamination": 8.71, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "7129089", "Number of Sequences": "1083", "Longest Sequences (bp)": "45768", "N50 (bp)": "7679", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "66.1", "Number of CDSs": "5252", "Average Protein Length": "320.9", "Coding Ratio (%)": "70.9", "Number of rRNAs": "0", "Number of tRNAs": "44", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Sandaracinus amylolyticus", "strain": "strain=DSM 53668", "accession": "GCA_000737325.2", "taxid": 927083, "species_taxid": 927083, "relation_to_type": "type", "validated": true, "ani": 75.3033, "matched_fragments": 402, "total_fragments": 1831, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tepidimonas fonticaldi", "strain": "strain=AT-A2", "accession": "GCA_007556755.1", "taxid": 1101373, "species_taxid": 1101373, "relation_to_type": "type", "validated": true, "ani": 75.0748, "matched_fragments": 65, "total_fragments": 1831, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Labilithrix luteola", "strain": "strain=DSM 27648", "accession": 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"relation_to_type": "type", "validated": true, "ani": 74.9514, "matched_fragments": 112, "total_fragments": 1831, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polyangium aurulentum", "strain": "strain=SDU3-1", "accession": "GCA_005144635.2", "taxid": 2567896, "species_taxid": 2567896, "relation_to_type": "type", "validated": true, "ani": 74.9478, "matched_fragments": 252, "total_fragments": 1831, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia nodosa", "strain": "strain=DSM 21604", "accession": "GCA_000519185.1", "taxid": 392320, "species_taxid": 392320, "relation_to_type": "type", "validated": true, "ani": 74.8871, "matched_fragments": 120, "total_fragments": 1831, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Haliangium ochraceum", "strain": "strain=DSM 14365", "accession": "GCA_000024805.1", "taxid": 80816, "species_taxid": 80816, "relation_to_type": "type", "validated": true, "ani": 74.8849, "matched_fragments": 227, "total_fragments": 1831, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas mephitis", "strain": "strain=DSM 12574", "accession": "GCA_000422305.1", "taxid": 83615, "species_taxid": 83615, "relation_to_type": "type", "validated": true, "ani": 74.8751, "matched_fragments": 66, "total_fragments": 1831, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Anaeromyxobacter dehalogenans", "strain": "strain=2CP-1", "accession": "GCA_000022145.1", "taxid": 161493, "species_taxid": 161493, "relation_to_type": "type", "validated": true, "ani": 74.8699, "matched_fragments": 138, "total_fragments": 1831, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenimonas caeni", "strain": "strain=z29", "accession": "GCA_003024235.1", "taxid": 2058085, "species_taxid": 2058085, "relation_to_type": "type", "validated": true, "ani": 74.8682, "matched_fragments": 69, "total_fragments": 1831, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Xanthomonas massiliensis", "strain": "strain=SN8", "accession": "GCA_900018785.1", "taxid": 1720302, "species_taxid": 1720302, "relation_to_type": "type", "validated": true, "ani": 74.8548, "matched_fragments": 67, "total_fragments": 1831, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polyangium fumosum", "strain": "strain=DSM 14668", "accession": "GCA_005144585.1", "taxid": 889272, "species_taxid": 889272, "relation_to_type": "neotype", "validated": true, "ani": 74.8524, "matched_fragments": 203, "total_fragments": 1831, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenimonas metalli", "strain": "strain=CF5-1", "accession": "GCA_000747155.1", "taxid": 948077, "species_taxid": 948077, "relation_to_type": "type", "validated": true, "ani": 74.8379, "matched_fragments": 73, "total_fragments": 1831, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas viscosa", "strain": "strain=XBU10", "accession": "GCA_008244685.1", "taxid": 1132694, "species_taxid": 1132694, "relation_to_type": "type", "validated": true, "ani": 74.8327, "matched_fragments": 86, "total_fragments": 1831, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fulvimonas soli", "strain": "strain=LMG 19981", "accession": "GCA_006352285.1", "taxid": 155197, "species_taxid": 155197, "relation_to_type": "type", "validated": true, "ani": 74.8305, "matched_fragments": 115, "total_fragments": 1831, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fulvimonas soli", "strain": "strain=DSM 14263", "accession": "GCA_003148905.1", "taxid": 155197, "species_taxid": 155197, "relation_to_type": "type", "validated": true, "ani": 74.8268, "matched_fragments": 119, "total_fragments": 1831, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium telephonicum", "strain": "strain=S2T63", "accession": "GCA_003651225.1", "taxid": 1714841, "species_taxid": 1714841, "relation_to_type": "type", "validated": true, "ani": 74.8116, "matched_fragments": 59, "total_fragments": 1831, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vulgatibacter incomptus", "strain": "strain=DSM 27710", "accession": "GCA_001263175.1", "taxid": 1391653, "species_taxid": 1391653, "relation_to_type": "type", "validated": true, "ani": 74.809, "matched_fragments": 56, "total_fragments": 1831, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia glaciei", "strain": "strain=B448-2", "accession": "GCA_003011895.2", "taxid": 1524097, "species_taxid": 1524097, "relation_to_type": "type", "validated": true, "ani": 74.8073, "matched_fragments": 119, "total_fragments": 1831, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas wenzhouensis", "strain": "strain=YD-1", "accession": "GCA_007859305.1", "taxid": 2599615, 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