{ "type": "genome", "identifier": "GCA_028293045.1", "organism": "Sphingomonadales bacterium", "title": "Sphingomonadales bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Colorado State University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_028293045.1", "bioproject": "PRJNA682830", "biosample": "SAMN17837615", "wgs_master": "JAQGLE000000000.1", "refseq_category": "na", "taxid": "1978525", "species_taxid": "1978525", "organism_name": "Sphingomonadales bacterium", "infraspecific_name": "", "isolate": "RYN_527", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/01/30", "asm_name": "ASM2829304v1", "submitter": "Colorado State University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/028/293/045/GCA_028293045.1_ASM2829304v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-01-30", "dateModified": "2023-01-30", "datePublished": "2023-01-30", "_annotation": { "sample_count": 1, "sample_organism": [ "Sphingomonadales bacterium" ], "sample_taxid": [ "1978525" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA:Wyoming" ], "sample_host_location_id": [], "data_size": "1.082 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 35.88, "contamination": 4.17, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3810918", "Number of Sequences": "311", "Longest Sequences (bp)": "100645", "N50 (bp)": "21126", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "60.3", "Number of CDSs": "3555", "Average Protein Length": "299.4", "Coding Ratio (%)": "83.8", "Number of rRNAs": "0", "Number of tRNAs": "45", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Sphingomonas paeninsulae", "strain": "strain=YZ-8", "accession": "GCA_003660165.1", "taxid": 2319844, "species_taxid": 2319844, "relation_to_type": "type", "validated": true, "ani": 80.8978, "matched_fragments": 478, "total_fragments": 1111, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas colocasiae", "strain": "strain=JCM 31229", "accession": "GCA_019880585.1", "taxid": 1848973, "species_taxid": 1848973, "relation_to_type": "type", "validated": true, "ani": 77.1882, "matched_fragments": 187, "total_fragments": 1111, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas solaris", "strain": "strain=R4DWN", "accession": "GCA_007785815.1", "taxid": 2529389, "species_taxid": 2529389, "relation_to_type": "type", "validated": true, "ani": 77.1244, "matched_fragments": 157, "total_fragments": 1111, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas cavernae", "strain": "strain=K2R01-6", "accession": "GCA_003590775.1", "taxid": 2320861, "species_taxid": 2320861, "relation_to_type": "type", "validated": true, "ani": 77.1125, "matched_fragments": 155, "total_fragments": 1111, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas glacialis", "strain": "strain=CGMCC 1.8957", "accession": "GCA_014653575.1", "taxid": 658225, "species_taxid": 658225, "relation_to_type": "type", "validated": true, "ani": 77.0476, "matched_fragments": 198, "total_fragments": 1111, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas sanxanigenens", "strain": "strain=NX02", "accession": "GCA_000512205.2", "taxid": 397260, "species_taxid": 397260, "relation_to_type": "type", "validated": true, "ani": 76.8952, "matched_fragments": 185, "total_fragments": 1111, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas changbaiensis", "strain": "strain=NBRC 104936", "accession": "GCA_000974765.1", "taxid": 529705, "species_taxid": 529705, "relation_to_type": "type", "validated": true, "ani": 76.8838, "matched_fragments": 150, "total_fragments": 1111, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobium terrigena", "strain": "strain=EO9", "accession": "GCA_003591655.1", "taxid": 2304063, "species_taxid": 2304063, "relation_to_type": "type", "validated": true, "ani": 76.8221, "matched_fragments": 158, "total_fragments": 1111, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingosinithalassobacter tenebrarum", "strain": "strain=zrk23", "accession": "GCA_011057975.1", "taxid": 2711215, "species_taxid": 2711215, "relation_to_type": "type", "validated": true, "ani": 76.8108, "matched_fragments": 159, "total_fragments": 1111, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobium amiense", "strain": "strain=DSM 16289", "accession": "GCA_003967075.1", "taxid": 135719, "species_taxid": 135719, "relation_to_type": "type", "validated": true, "ani": 76.8085, "matched_fragments": 166, "total_fragments": 1111, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas changnyeongensis", "strain": "strain=C33", "accession": "GCA_009913435.1", "taxid": 2698679, "species_taxid": 2698679, "relation_to_type": "type", "validated": true, "ani": 76.8046, "matched_fragments": 169, "total_fragments": 1111, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobium boeckii", "strain": "strain=DSM 25079", "accession": "GCA_014199215.1", "taxid": 1082345, "species_taxid": 1082345, "relation_to_type": "type", "validated": true, "ani": 76.7742, "matched_fragments": 148, "total_fragments": 1111, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas flavalba", "strain": "strain=ZLT-5", "accession": "GCA_004796535.1", "taxid": 2559804, "species_taxid": 2559804, "relation_to_type": "type", "validated": true, "ani": 76.7334, "matched_fragments": 165, "total_fragments": 1111, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobium herbicidovorans", "strain": "strain=MH", "accession": "GCA_002080435.1", "taxid": 76947, "species_taxid": 76947, "relation_to_type": "type", "validated": true, "ani": 76.6622, "matched_fragments": 116, "total_fragments": 1111, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobium herbicidovorans", "strain": "strain=NBRC 16415", "accession": "GCA_001598535.1", "taxid": 76947, "species_taxid": 76947, "relation_to_type": "type", "validated": true, "ani": 76.6442, "matched_fragments": 114, "total_fragments": 1111, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas hominis", "strain": "strain=HHU CXW", "accession": "GCA_013328205.1", "taxid": 2741495, "species_taxid": 2741495, "relation_to_type": "type", "validated": true, "ani": 76.6272, "matched_fragments": 143, "total_fragments": 1111, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobium herbicidovorans", "strain": "strain=NBRC 16415", "accession": "GCA_000632125.2", "taxid": 76947, "species_taxid": 76947, "relation_to_type": "type", "validated": true, "ani": 76.6262, "matched_fragments": 118, "total_fragments": 1111, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas azotifigens", "strain": "strain=NBRC 15497", "accession": "GCA_002091475.1", "taxid": 330920, "species_taxid": 330920, "relation_to_type": "type", "validated": true, "ani": 76.6224, "matched_fragments": 164, "total_fragments": 1111, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas formosensis", "strain": "strain=CC-Nfb-2", "accession": "GCA_009755815.1", "taxid": 861534, "species_taxid": 861534, "relation_to_type": "type", "validated": true, "ani": 76.5285, "matched_fragments": 176, "total_fragments": 1111, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas suaedae", "strain": "strain=XS-10", "accession": "GCA_007833215.1", "taxid": 2599297, "species_taxid": 2599297, "relation_to_type": "type", "validated": true, "ani": 76.5033, "matched_fragments": 196, "total_fragments": 1111, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas baiyangensis", "strain": "strain=L-1-4 w-11", "accession": "GCA_005144715.1", "taxid": 2572576, "species_taxid": 2572576, "relation_to_type": "type", "validated": true, "ani": 76.4805, "matched_fragments": 164, "total_fragments": 1111, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobium indicum", "strain": "strain=B90A", "accession": "GCA_000264945.2", "taxid": 332055, "species_taxid": 332055, "relation_to_type": "type", "validated": true, "ani": 76.4592, "matched_fragments": 158, "total_fragments": 1111, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas citri", "strain": "strain=RRHST34", "accession": "GCA_019429485.1", "taxid": 2862499, "species_taxid": 2862499, "relation_to_type": "type", "validated": true, "ani": 76.4, "matched_fragments": 154, "total_fragments": 1111, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Croceicoccus sediminis", "strain": "strain=S2-4-2", "accession": "GCA_007570835.1", "taxid": 2571150, "species_taxid": 2571150, "relation_to_type": "type", "validated": true, "ani": 76.3785, "matched_fragments": 90, "total_fragments": 1111, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stakelama flava", "strain": "strain=CBK3Z-3", "accession": "GCA_019351405.1", "taxid": 2860338, "species_taxid": 2860338, "relation_to_type": "type", "validated": true, "ani": 76.2596, "matched_fragments": 126, "total_fragments": 1111, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas deserti", "strain": "strain=GL-C-18", "accession": "GCA_003012735.1", "taxid": 2116704, "species_taxid": 2116704, "relation_to_type": "type", "validated": true, "ani": 76.0968, "matched_fragments": 136, "total_fragments": 1111, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium ginsenosidimutans", "strain": "strain=FW-6", "accession": "GCA_007954425.1", "taxid": 1176536, "species_taxid": 1176536, "relation_to_type": "type", "validated": true, "ani": 76.0276, "matched_fragments": 87, "total_fragments": 1111, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas mesophila", "strain": "strain=SYSUP0001", "accession": "GCA_003499275.1", "taxid": 2303576, "species_taxid": 2303576, "relation_to_type": "type", "validated": true, "ani": 75.9269, "matched_fragments": 82, "total_fragments": 1111, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 35.88, "contamination": 4.17, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCF_003660165.1", "gtdb_species": "s__UBA1936 sp003660165", "ani": 80.8978, "matched_fragments": 478, "total_fragments": 1111, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__UBA1936", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_013821585.1", "gtdb_species": "s__UBA1936 sp013821585", "ani": 77.6101, "matched_fragments": 147, "total_fragments": 1111, "gtdb_taxonomy": 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"d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas_L", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000935025.1", "gtdb_species": "s__Sphingomonas hengshuiensis", "ani": 76.9349, "matched_fragments": 185, "total_fragments": 1111, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000512205.2", "gtdb_species": "s__Sphingomonas_D sanxanigenens", "ani": 76.9192, "matched_fragments": 186, "total_fragments": 1111, "gtdb_taxonomy": 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