{
    "type": "genome",
    "identifier": "GCA_028685595.1",
    "organism": "Endomicrobiaceae bacterium",
    "title": "Endomicrobiaceae bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "University of Waterloo",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_028685595.1",
        "bioproject": "PRJNA900590",
        "biosample": "SAMN32733787",
        "wgs_master": "JAQUDR000000000.1",
        "refseq_category": "na",
        "taxid": "2775028",
        "species_taxid": "2775028",
        "organism_name": "Endomicrobiaceae bacterium",
        "infraspecific_name": "",
        "isolate": "STCSWMC_159",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2023/02/17",
        "asm_name": "ASM2868559v1",
        "submitter": "University of Waterloo",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/028/685/595/GCA_028685595.1_ASM2868559v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2023-02-17",
    "dateModified": "2023-02-17",
    "datePublished": "2023-02-17",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Endomicrobiaceae bacterium"
        ],
        "sample_taxid": [
            "2775028"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA"
        ],
        "sample_host_location_id": [],
        "data_size": "0.429 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 89.81,
        "contamination": 4.17,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1548442",
        "Number of Sequences": "194",
        "Longest Sequences (bp)": "42851",
        "N50 (bp)": "11007",
        "Gap Ratio (%)": "0.019374",
        "GCcontent (%)": "28.8",
        "Number of CDSs": "1209",
        "Average Protein Length": "326.1",
        "Coding Ratio (%)": "76.4",
        "Number of rRNAs": "0",
        "Number of tRNAs": "32",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [],
        "cc_result": {
            "completeness": 89.81,
            "contamination": 4.17,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
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                "accession": "GCA_018433585.1",
                "gtdb_species": "s__JAHDQW01 sp018433585",
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                "total_fragments": 411,
                "gtdb_taxonomy": "d__Bacteria;p__Elusimicrobiota;c__Endomicrobia;o__Endomicrobiales;f__Endomicrobiaceae;g__JAHDQW01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_902761395.1",
                "gtdb_species": "s__RUG658 sp902761395",
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                "total_fragments": 411,
                "gtdb_taxonomy": "d__Bacteria;p__Elusimicrobiota;c__Endomicrobia;o__Endomicrobiales;f__Endomicrobiaceae;g__RUG658",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017525905.1",
                "gtdb_species": "s__RUG658 sp017525905",
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                "matched_fragments": 100,
                "total_fragments": 411,
                "gtdb_taxonomy": "d__Bacteria;p__Elusimicrobiota;c__Endomicrobia;o__Endomicrobiales;f__Endomicrobiaceae;g__RUG658",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.07",
                "min_intra_species_ani": "97.07",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_017528425.1",
                "gtdb_species": "s__RUG658 sp017528425",
                "ani": 77.132,
                "matched_fragments": 105,
                "total_fragments": 411,
                "gtdb_taxonomy": "d__Bacteria;p__Elusimicrobiota;c__Endomicrobia;o__Endomicrobiales;f__Endomicrobiaceae;g__RUG658",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900321055.1",
                "gtdb_species": "s__RUG658 sp900321055",
                "ani": 77.1214,
                "matched_fragments": 94,
                "total_fragments": 411,
                "gtdb_taxonomy": "d__Bacteria;p__Elusimicrobiota;c__Endomicrobia;o__Endomicrobiales;f__Endomicrobiaceae;g__RUG658",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.63",
                "min_intra_species_ani": "99.63",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_017529005.1",
                "gtdb_species": "s__RUG658 sp017529005",
                "ani": 77.0982,
                "matched_fragments": 122,
                "total_fragments": 411,
                "gtdb_taxonomy": "d__Bacteria;p__Elusimicrobiota;c__Endomicrobia;o__Endomicrobiales;f__Endomicrobiaceae;g__RUG658",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017651625.1",
                "gtdb_species": "s__RUG658 sp017651625",
                "ani": 77.0226,
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                "total_fragments": 411,
                "gtdb_taxonomy": "d__Bacteria;p__Elusimicrobiota;c__Endomicrobia;o__Endomicrobiales;f__Endomicrobiaceae;g__RUG658",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002448285.1",
                "gtdb_species": "s__RUG658 sp002448285",
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                "matched_fragments": 116,
                "total_fragments": 411,
                "gtdb_taxonomy": "d__Bacteria;p__Elusimicrobiota;c__Endomicrobia;o__Endomicrobiales;f__Endomicrobiaceae;g__RUG658",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.20",
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                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 8,
                "status": "-"
            },
            {
                "accession": "GCA_018433245.1",
                "gtdb_species": "s__JAHDRN01 sp018433245",
                "ani": 76.8563,
                "matched_fragments": 91,
                "total_fragments": 411,
                "gtdb_taxonomy": "d__Bacteria;p__Elusimicrobiota;c__Endomicrobia;o__Endomicrobiales;f__Endomicrobiaceae;g__JAHDRN01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900316875.1",
                "gtdb_species": "s__RUG240 sp900316875",
                "ani": 76.5538,
                "matched_fragments": 80,
                "total_fragments": 411,
                "gtdb_taxonomy": "d__Bacteria;p__Elusimicrobiota;c__Endomicrobia;o__Endomicrobiales;f__Endomicrobiaceae;g__RUG240",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.98",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_017413305.1",
                "gtdb_species": "s__RUG658 sp017413305",
                "ani": 76.5271,
                "matched_fragments": 55,
                "total_fragments": 411,
                "gtdb_taxonomy": "d__Bacteria;p__Elusimicrobiota;c__Endomicrobia;o__Endomicrobiales;f__Endomicrobiaceae;g__RUG658",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": 30.0,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": 1359909.6,
        "gc_content": 37.293,
        "coding_genes": 1120.416,
        "rRNA16S_genes": 1.0,
        "tRNA_genes": 46.0,
        "gram_stain": 0.0,
        "sporulation": null,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Elusimicrobiota",
        "c__Endomicrobiia",
        "o__Endomicrobiales",
        "f__Endomicrobiaceae",
        "g__JAHDQW01",
        "s__JAHDQW01 sp028690485"
    ],
    "_genome_taxon": [
        "Endomicrobiaceae",
        "bacterium",
        "d__Bacteria",
        "p__Elusimicrobiota",
        "c__Endomicrobiia",
        "o__Endomicrobiales",
        "f__Endomicrobiaceae",
        "g__JAHDQW01",
        "s__JAHDQW01 sp028690485",
        "Bacteria",
        "Elusimicrobiota",
        "Endomicrobiia",
        "Endomicrobiales",
        "Endomicrobiaceae",
        "JAHDQW01",
        "JAHDQW01",
        "sp028690485"
    ],
    "_meo": [
        {
            "id": "MEO_0000950",
            "label": "landfill"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}