{ "type": "genome", "identifier": "GCA_028694635.1", "organism": "Methanobacteriales archaeon", "title": "Methanobacteriales archaeon", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "University of Waterloo", "publication": [ {} ], "properties": { "assembly_accession": "GCA_028694635.1", "bioproject": "PRJNA900590", "biosample": "SAMN32734932", "wgs_master": "JAQVKL000000000.1", "refseq_category": "na", "taxid": "2478476", "species_taxid": "2478476", "organism_name": "Methanobacteriales archaeon", "infraspecific_name": "", "isolate": "STE_86", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/02/17", "asm_name": "ASM2869463v1", "submitter": "University of Waterloo", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/028/694/635/GCA_028694635.1_ASM2869463v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-02-17", "dateModified": "2023-02-17", "datePublished": "2023-02-17", "_annotation": { "sample_count": 1, "sample_organism": [ "Methanobacteriales archaeon" ], "sample_taxid": [ "2478476" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA" ], "sample_host_location_id": [], "data_size": "0.358 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 94.91, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1238952", "Number of Sequences": "179", "Longest Sequences (bp)": "35091", "N50 (bp)": "7839", "Gap Ratio (%)": "0.001614", "GCcontent (%)": "42.0", "Number of CDSs": "1205", "Average Protein Length": "257.2", "Coding Ratio (%)": "75.0", "Number of rRNAs": "1", "Number of tRNAs": "32", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Methanothermobacter tenebrarum", "strain": "strain=RMAS", "accession": "GCA_023167465.1", "taxid": 680118, "species_taxid": 680118, "relation_to_type": "type", "validated": true, "ani": 99.659, "matched_fragments": 324, "total_fragments": 328, "ani_threshold": 95, "status": "conclusive" } ], "cc_result": { "completeness": 94.91, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_012840175.1", "gtdb_species": "s__Methanothermobacter_A sp012840175", "ani": 99.6108, "matched_fragments": 313, "total_fragments": 328, "gtdb_taxonomy": "d__Archaea;p__Methanobacteriota;c__Methanobacteria;o__Methanobacteriales;f__Methanothermobacteraceae_A;g__Methanothermobacter_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCA_001507955.1", "gtdb_species": "s__Methanothermobacter_A sp001507955", "ani": 87.509, "matched_fragments": 239, "total_fragments": 328, "gtdb_taxonomy": "d__Archaea;p__Methanobacteriota;c__Methanobacteria;o__Methanobacteriales;f__Methanothermobacteraceae_A;g__Methanothermobacter_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.54", "min_intra_species_ani": "99.35", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.77", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_003264935.1", "gtdb_species": "s__Methanothermobacter_A tenebrarum", "ani": 87.4412, "matched_fragments": 291, 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"bacillus_cell_shape": 0.782, "coccus_cell_shape": 0.13, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.086, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Archaea", "p__Methanobacteriota", "c__Methanobacteria", "o__Methanobacteriales", "f__DSM-23052", "g__Methanothermobacter_A", "s__Methanothermobacter_A tenebrarum" ], "_genome_taxon": [ "Methanobacteriales", "archaeon", "d__Archaea", "p__Methanobacteriota", "c__Methanobacteria", "o__Methanobacteriales", "f__DSM-23052", "g__Methanothermobacter_A", "s__Methanothermobacter_A tenebrarum", "Archaea", "Methanobacteriota", "Methanobacteria", "Methanobacteriales", "DSM-23052", "Methanothermobacter", "A", "Methanothermobacter", "A", "tenebrarum" ], "_meo": [ { "id": "MEO_0000950", "label": "landfill" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }