{
    "type": "genome",
    "identifier": "GCA_028705435.1",
    "organism": "Mesotoga sp.",
    "title": "Mesotoga sp.",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "University of Waterloo",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_028705435.1",
        "bioproject": "PRJNA900590",
        "biosample": "SAMN32737672",
        "wgs_master": "JAQWDN000000000.1",
        "refseq_category": "na",
        "taxid": "2053577",
        "species_taxid": "2053577",
        "organism_name": "Mesotoga sp.",
        "infraspecific_name": "",
        "isolate": "STF2_52",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2023/02/18",
        "asm_name": "ASM2870543v1",
        "submitter": "University of Waterloo",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/028/705/435/GCA_028705435.1_ASM2870543v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2023-02-18",
    "dateModified": "2023-02-18",
    "datePublished": "2023-02-18",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Mesotoga sp."
        ],
        "sample_taxid": [
            "2053577"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA"
        ],
        "sample_host_location_id": [],
        "data_size": "0.684 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.37,
        "contamination": 0.46,
        "strain_heterogeneity": 100.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2355318",
        "Number of Sequences": "376",
        "Longest Sequences (bp)": "26966",
        "N50 (bp)": "7216",
        "Gap Ratio (%)": "0.005944",
        "GCcontent (%)": "50.4",
        "Number of CDSs": "1945",
        "Average Protein Length": "302.6",
        "Coding Ratio (%)": "75.0",
        "Number of rRNAs": "0",
        "Number of tRNAs": "37",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Mesotoga prima",
                "strain": "strain=MesG1.Ag.4.2",
                "accession": "GCA_000147715.3",
                "taxid": 1184387,
                "species_taxid": 1184387,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.8246,
                "matched_fragments": 84,
                "total_fragments": 599,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 95.37,
            "contamination": 0.46,
            "strain_heterogeneity": 100.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_002305955.1",
                "gtdb_species": "s__Mesotoga sp002305955",
                "ani": 99.6746,
                "matched_fragments": 537,
                "total_fragments": 599,
                "gtdb_taxonomy": "d__Bacteria;p__Thermotogota;c__Thermotogae;o__Petrotogales;f__Kosmotogaceae;g__Mesotoga",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.56",
                "min_intra_species_ani": "99.32",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.77",
                "num_clustered_genomes": 7,
                "status": "conclusive"
            },
            {
                "accession": "GCF_900157305.1",
                "gtdb_species": "s__Mesotoga infera_B",
                "ani": 89.1413,
                "matched_fragments": 550,
                "total_fragments": 599,
                "gtdb_taxonomy": "d__Bacteria;p__Thermotogota;c__Thermotogae;o__Petrotogales;f__Kosmotogaceae;g__Mesotoga",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.81",
                "min_intra_species_ani": "98.51",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.74",
                "num_clustered_genomes": 9,
                "status": "-"
            },
            {
                "accession": "GCF_000147715.2",
                "gtdb_species": "s__Mesotoga prima",
                "ani": 78.8246,
                "matched_fragments": 84,
                "total_fragments": 599,
                "gtdb_taxonomy": "d__Bacteria;p__Thermotogota;c__Thermotogae;o__Petrotogales;f__Kosmotogaceae;g__Mesotoga",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.16",
                "min_intra_species_ani": "96.75",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCF_003664995.1",
                "gtdb_species": "s__Mesotoga sp003664995",
                "ani": 78.8246,
                "matched_fragments": 83,
                "total_fragments": 599,
                "gtdb_taxonomy": "d__Bacteria;p__Thermotogota;c__Thermotogae;o__Petrotogales;f__Kosmotogaceae;g__Mesotoga",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.98",
                "min_intra_species_ani": "98.98",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_002752635.1",
                "gtdb_species": "s__Mesotoga sp002752635",
                "ani": 77.9973,
                "matched_fragments": 81,
                "total_fragments": 599,
                "gtdb_taxonomy": "d__Bacteria;p__Thermotogota;c__Thermotogae;o__Petrotogales;f__Kosmotogaceae;g__Mesotoga",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.07",
                "min_intra_species_ani": "97.29",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 15,
                "status": "-"
            },
            {
                "accession": "GCA_011045915.1",
                "gtdb_species": "s__Mesotoga infera_D",
                "ani": 77.9317,
                "matched_fragments": 72,
                "total_fragments": 599,
                "gtdb_taxonomy": "d__Bacteria;p__Thermotogota;c__Thermotogae;o__Petrotogales;f__Kosmotogaceae;g__Mesotoga",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": 0.067,
        "cell_length": 0.367,
        "doubling_h": null,
        "growth_tmp": 45.0,
        "optimum_tmp": 43.333,
        "optimum_ph": 7.4,
        "genome_size": 3058345.0,
        "gc_content": 48.3,
        "coding_genes": 2809.0,
        "rRNA16S_genes": null,
        "tRNA_genes": 46.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Thermotogota",
        "c__Thermotogae",
        "o__Petrotogales",
        "f__Kosmotogaceae",
        "g__Mesotoga",
        "s__Mesotoga sp002305955"
    ],
    "_genome_taxon": [
        "Mesotoga",
        "sp.",
        "d__Bacteria",
        "p__Thermotogota",
        "c__Thermotogae",
        "o__Petrotogales",
        "f__Kosmotogaceae",
        "g__Mesotoga",
        "s__Mesotoga sp002305955",
        "Bacteria",
        "Thermotogota",
        "Thermotogae",
        "Petrotogales",
        "Kosmotogaceae",
        "Mesotoga",
        "Mesotoga",
        "sp002305955"
    ],
    "_meo": [
        {
            "id": "MEO_0000950",
            "label": "landfill"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}