{
    "type": "genome",
    "identifier": "GCA_028708495.1",
    "organism": "Fermentimonas sp.",
    "title": "Fermentimonas sp.",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "University of Waterloo",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_028708495.1",
        "bioproject": "PRJNA900590",
        "biosample": "SAMN32737551",
        "wgs_master": "JAQVYW000000000.1",
        "refseq_category": "na",
        "taxid": "2023870",
        "species_taxid": "2023870",
        "organism_name": "Fermentimonas sp.",
        "infraspecific_name": "",
        "isolate": "STF2_159",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2023/02/18",
        "asm_name": "ASM2870849v1",
        "submitter": "University of Waterloo",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/028/708/495/GCA_028708495.1_ASM2870849v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2023-02-18",
    "dateModified": "2023-02-18",
    "datePublished": "2023-02-18",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Fermentimonas sp."
        ],
        "sample_taxid": [
            "2023870"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA"
        ],
        "sample_host_location_id": [],
        "data_size": "0.698 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2436372",
        "Number of Sequences": "82",
        "Longest Sequences (bp)": "133757",
        "N50 (bp)": "53670",
        "Gap Ratio (%)": "0.065671",
        "GCcontent (%)": "37.6",
        "Number of CDSs": "1954",
        "Average Protein Length": "367.8",
        "Coding Ratio (%)": "88.5",
        "Number of rRNAs": "1",
        "Number of tRNAs": "26",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Lascolabacillus massiliensis",
                "strain": "strain=SIT8",
                "accession": "GCA_001282625.1",
                "taxid": 1627894,
                "species_taxid": 1627894,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.4181,
                "matched_fragments": 430,
                "total_fragments": 768,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Proteiniphilum acetatigenes",
                "strain": "strain=DSM 18083",
                "accession": "GCA_000380985.1",
                "taxid": 294710,
                "species_taxid": 294710,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.0377,
                "matched_fragments": 69,
                "total_fragments": 768,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Proteiniphilum saccharofermentans",
                "strain": "strain=M3/6",
                "accession": "GCA_900095135.1",
                "taxid": 1642647,
                "species_taxid": 1642647,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.6565,
                "matched_fragments": 70,
                "total_fragments": 768,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_002398875.1",
                "gtdb_species": "s__Fermentimonas sp002398875",
                "ani": 99.5476,
                "matched_fragments": 717,
                "total_fragments": 768,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Dysgonomonadaceae;g__Fermentimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.50",
                "min_intra_species_ani": "99.32",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 9,
                "status": "conclusive"
            },
            {
                "accession": "GCF_001282625.1",
                "gtdb_species": "s__Fermentimonas massiliensis",
                "ani": 79.4128,
                "matched_fragments": 431,
                "total_fragments": 768,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Dysgonomonadaceae;g__Fermentimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.52",
                "min_intra_species_ani": "99.22",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 9,
                "status": "-"
            },
            {
                "accession": "GCA_012841425.1",
                "gtdb_species": "s__Fermentimonas sp012841425",
                "ani": 77.8196,
                "matched_fragments": 83,
                "total_fragments": 768,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Dysgonomonadaceae;g__Fermentimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_015478775.1",
                "gtdb_species": "s__Fermentimonas sp015478775",
                "ani": 77.3714,
                "matched_fragments": 175,
                "total_fragments": 768,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Dysgonomonadaceae;g__Fermentimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_012513315.1",
                "gtdb_species": "s__Fermentimonas sp012513315",
                "ani": 77.3387,
                "matched_fragments": 140,
                "total_fragments": 768,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Dysgonomonadaceae;g__Fermentimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_001768325.1",
                "gtdb_species": "s__Proteiniphilum sp001768325",
                "ani": 77.2699,
                "matched_fragments": 80,
                "total_fragments": 768,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Dysgonomonadaceae;g__Proteiniphilum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.21",
                "min_intra_species_ani": "95.58",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 7,
                "status": "-"
            },
            {
                "accession": "GCA_002398565.1",
                "gtdb_species": "s__Proteiniphilum sp002398565",
                "ani": 76.9889,
                "matched_fragments": 72,
                "total_fragments": 768,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Dysgonomonadaceae;g__Proteiniphilum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.17",
                "min_intra_species_ani": "99.05",
                "mean_intra_species_af": "0.83",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_002383605.1",
                "gtdb_species": "s__Proteiniphilum sp002383605",
                "ani": 76.9012,
                "matched_fragments": 82,
                "total_fragments": 768,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Dysgonomonadaceae;g__Proteiniphilum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.07",
                "min_intra_species_ani": "99.07",
                "mean_intra_species_af": "0.78",
                "min_intra_species_af": "0.78",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_002305715.1",
                "gtdb_species": "s__Proteiniphilum sp002305715",
                "ani": 76.7772,
                "matched_fragments": 80,
                "total_fragments": 768,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Dysgonomonadaceae;g__Proteiniphilum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002411515.1",
                "gtdb_species": "s__Proteiniphilum sp002411515",
                "ani": 76.7523,
                "matched_fragments": 68,
                "total_fragments": 768,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Dysgonomonadaceae;g__Proteiniphilum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.02",
                "min_intra_species_ani": "99.02",
                "mean_intra_species_af": "0.84",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_002410345.1",
                "gtdb_species": "s__Proteiniphilum sp002410345",
                "ani": 76.7388,
                "matched_fragments": 81,
                "total_fragments": 768,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Dysgonomonadaceae;g__Proteiniphilum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.79",
                "min_intra_species_ani": "99.65",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.79",
                "num_clustered_genomes": 18,
                "status": "-"
            },
            {
                "accession": "GCA_002410825.1",
                "gtdb_species": "s__Proteiniphilum sp002410825",
                "ani": 76.5665,
                "matched_fragments": 67,
                "total_fragments": 768,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Dysgonomonadaceae;g__Proteiniphilum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002408485.1",
                "gtdb_species": "s__Proteiniphilum sp002408485",
                "ani": 76.4735,
                "matched_fragments": 88,
                "total_fragments": 768,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Dysgonomonadaceae;g__Proteiniphilum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.68",
                "min_intra_species_ani": "99.43",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.77",
                "num_clustered_genomes": 12,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": 2808927.0,
        "gc_content": 37.3,
        "coding_genes": 2348.667,
        "rRNA16S_genes": 2.0,
        "tRNA_genes": 44.0,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacteroidota",
        "c__Bacteroidia",
        "o__Bacteroidales",
        "f__Dysgonomonadaceae",
        "g__Proteiniphilum",
        "s__Proteiniphilum sp002398875"
    ],
    "_genome_taxon": [
        "Fermentimonas",
        "sp.",
        "d__Bacteria",
        "p__Bacteroidota",
        "c__Bacteroidia",
        "o__Bacteroidales",
        "f__Dysgonomonadaceae",
        "g__Proteiniphilum",
        "s__Proteiniphilum sp002398875",
        "Bacteria",
        "Bacteroidota",
        "Bacteroidia",
        "Bacteroidales",
        "Dysgonomonadaceae",
        "Proteiniphilum",
        "Proteiniphilum",
        "sp002398875"
    ],
    "_meo": [
        {
            "id": "MEO_0000950",
            "label": "landfill"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}