{
    "type": "genome",
    "identifier": "GCA_028708575.1",
    "organism": "Tissierellia bacterium",
    "title": "Tissierellia bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "University of Waterloo",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_028708575.1",
        "bioproject": "PRJNA900590",
        "biosample": "SAMN32737545",
        "wgs_master": "JAQVYQ000000000.1",
        "refseq_category": "na",
        "taxid": "2049431",
        "species_taxid": "2049431",
        "organism_name": "Tissierellia bacterium",
        "infraspecific_name": "",
        "isolate": "STF2_153",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2023/02/18",
        "asm_name": "ASM2870857v1",
        "submitter": "University of Waterloo",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/028/708/575/GCA_028708575.1_ASM2870857v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2023-02-18",
    "dateModified": "2023-02-18",
    "datePublished": "2023-02-18",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Tissierellia bacterium"
        ],
        "sample_taxid": [
            "2049431"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA"
        ],
        "sample_host_location_id": [],
        "data_size": "0.558 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 4.17,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2002869",
        "Number of Sequences": "105",
        "Longest Sequences (bp)": "116954",
        "N50 (bp)": "28911",
        "Gap Ratio (%)": "0.189728",
        "GCcontent (%)": "31.1",
        "Number of CDSs": "1887",
        "Average Protein Length": "301.8",
        "Coding Ratio (%)": "85.3",
        "Number of rRNAs": "0",
        "Number of tRNAs": "48",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Tissierella pigra",
                "strain": "strain=WCA3-693-APC-4",
                "accession": "GCA_009695605.1",
                "taxid": 2607614,
                "species_taxid": 2607614,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.5586,
                "matched_fragments": 93,
                "total_fragments": 613,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Tissierella simiarum",
                "strain": "strain=MSJ-40",
                "accession": "GCA_018917865.1",
                "taxid": 2841534,
                "species_taxid": 2841534,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.154,
                "matched_fragments": 79,
                "total_fragments": 613,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Keratinibaculum paraultunense",
                "strain": "strain=KD-1",
                "accession": "GCA_016767175.1",
                "taxid": 1278232,
                "species_taxid": 1278232,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.9362,
                "matched_fragments": 55,
                "total_fragments": 613,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Keratinibaculum paraultunense",
                "strain": "strain=DSM 26752",
                "accession": "GCA_004343355.1",
                "taxid": 1278232,
                "species_taxid": 1278232,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.8321,
                "matched_fragments": 55,
                "total_fragments": 613,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 4.17,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_012520755.1",
                "gtdb_species": "s__UBA3583 sp012520755",
                "ani": 82.5377,
                "matched_fragments": 365,
                "total_fragments": 613,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Tissierellales;f__Tissierellaceae;g__UBA3583",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002375815.1",
                "gtdb_species": "s__UBA3583 sp002375815",
                "ani": 77.4555,
                "matched_fragments": 179,
                "total_fragments": 613,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Tissierellales;f__Tissierellaceae;g__UBA3583",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_005046945.1",
                "gtdb_species": "s__Tissierella_B creatinini",
                "ani": 77.1867,
                "matched_fragments": 82,
                "total_fragments": 613,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Tissierellales;f__Tissierellaceae;g__Tissierella_B",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_014385225.1",
                "gtdb_species": "s__JACRTK01 sp014385225",
                "ani": 76.7568,
                "matched_fragments": 64,
                "total_fragments": 613,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Tissierellales;f__Tissierellaceae;g__JACRTK01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_009695605.1",
                "gtdb_species": "s__DSM105185 sp009695605",
                "ani": 76.5586,
                "matched_fragments": 93,
                "total_fragments": 613,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Tissierellales;f__Tissierellaceae;g__DSM105185",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.10",
                "min_intra_species_ani": "99.10",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_902386935.1",
                "gtdb_species": "s__CABMKH01 sp902386935",
                "ani": 76.2778,
                "matched_fragments": 57,
                "total_fragments": 613,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Tissierellales;f__Tissierellaceae;g__CABMKH01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_018917865.1",
                "gtdb_species": "s__MSJ-40 sp018917865",
                "ani": 76.1733,
                "matched_fragments": 78,
                "total_fragments": 613,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Tissierellales;f__Tissierellaceae;g__MSJ-40",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_016767175.1",
                "gtdb_species": "s__Keratinibaculum paraultunense",
                "ani": 75.9362,
                "matched_fragments": 55,
                "total_fragments": 613,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Tissierellales;f__Tepidimicrobiaceae;g__Keratinibaculum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__Tissierellales",
        "f__Tissierellaceae",
        "g__UBA3583",
        "s__UBA3583 sp028708575"
    ],
    "_genome_taxon": [
        "Tissierellia",
        "bacterium",
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__Tissierellales",
        "f__Tissierellaceae",
        "g__UBA3583",
        "s__UBA3583 sp028708575",
        "Bacteria",
        "Bacillota",
        "A",
        "Clostridia",
        "Tissierellales",
        "Tissierellaceae",
        "UBA3583",
        "UBA3583",
        "sp028708575"
    ],
    "_meo": [
        {
            "id": "MEO_0000950",
            "label": "landfill"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}