{
    "type": "genome",
    "identifier": "GCA_028708665.1",
    "organism": "Eubacterium aggregans",
    "title": "Eubacterium aggregans",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "University of Waterloo",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_028708665.1",
        "bioproject": "PRJNA900590",
        "biosample": "SAMN32737540",
        "wgs_master": "JAQVYL000000000.1",
        "refseq_category": "na",
        "taxid": "81409",
        "species_taxid": "81409",
        "organism_name": "Eubacterium aggregans",
        "infraspecific_name": "",
        "isolate": "STF2_149",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2023/02/18",
        "asm_name": "ASM2870866v1",
        "submitter": "University of Waterloo",
        "gbrs_paired_asm": "GCF_028708665.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/028/708/665/GCA_028708665.1_ASM2870866v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2023-02-18",
    "dateModified": "2023-02-18",
    "datePublished": "2023-02-18",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Eubacterium aggregans"
        ],
        "sample_taxid": [
            "81409"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA"
        ],
        "sample_host_location_id": [],
        "data_size": "0.637 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.83,
        "contamination": 5.21,
        "strain_heterogeneity": 50.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2215558",
        "Number of Sequences": "175",
        "Longest Sequences (bp)": "81017",
        "N50 (bp)": "19099",
        "Gap Ratio (%)": "0.090271",
        "GCcontent (%)": "49.2",
        "Number of CDSs": "1973",
        "Average Protein Length": "310.9",
        "Coding Ratio (%)": "83.1",
        "Number of rRNAs": "2",
        "Number of tRNAs": "32",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Eubacterium aggregans",
                "strain": "strain=SR12",
                "accession": "GCA_900107815.1",
                "taxid": 81409,
                "species_taxid": 81409,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.0326,
                "matched_fragments": 620,
                "total_fragments": 645,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Eubacterium barkeri",
                "strain": "strain=VPI 5359",
                "accession": "GCA_900107125.1",
                "taxid": 1528,
                "species_taxid": 1528,
                "relation_to_type": "type",
                "validated": true,
                "ani": 91.864,
                "matched_fragments": 578,
                "total_fragments": 645,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Eubacterium limosum",
                "strain": "strain=ATCC 8486",
                "accession": "GCA_000807675.2",
                "taxid": 1736,
                "species_taxid": 1736,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.0996,
                "matched_fragments": 63,
                "total_fragments": 645,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Eubacterium callanderi",
                "strain": "strain=FD",
                "accession": "GCA_900142645.1",
                "taxid": 53442,
                "species_taxid": 53442,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9461,
                "matched_fragments": 57,
                "total_fragments": 645,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Eubacterium maltosivorans",
                "strain": "strain=YI",
                "accession": "GCA_002441855.2",
                "taxid": 2041044,
                "species_taxid": 2041044,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.7203,
                "matched_fragments": 74,
                "total_fragments": 645,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 95.83,
            "contamination": 5.21,
            "strain_heterogeneity": 50.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_900107815.1",
                "gtdb_species": "s__Eubacterium_O aggregans",
                "ani": 99.0034,
                "matched_fragments": 621,
                "total_fragments": 645,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Eubacteriales;f__Eubacteriaceae;g__Eubacterium_O",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_900107125.1",
                "gtdb_species": "s__Eubacterium_O barkeri",
                "ani": 91.864,
                "matched_fragments": 578,
                "total_fragments": 645,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Eubacteriales;f__Eubacteriaceae;g__Eubacterium_O",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000807675.2",
                "gtdb_species": "s__Eubacterium limosum",
                "ani": 77.0996,
                "matched_fragments": 63,
                "total_fragments": 645,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Eubacteriales;f__Eubacteriaceae;g__Eubacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.75",
                "min_intra_species_ani": "97.93",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_015547515.1",
                "gtdb_species": "s__Eubacterium sp015547515",
                "ani": 76.9602,
                "matched_fragments": 69,
                "total_fragments": 645,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Eubacteriales;f__Eubacteriaceae;g__Eubacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900142645.1",
                "gtdb_species": "s__Eubacterium callanderi",
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                "matched_fragments": 57,
                "total_fragments": 645,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Eubacteriales;f__Eubacteriaceae;g__Eubacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.78",
                "min_intra_species_ani": "98.14",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 13,
                "status": "-"
            },
            {
                "accession": "GCF_002441855.2",
                "gtdb_species": "s__Eubacterium maltosivorans",
                "ani": 76.7203,
                "matched_fragments": 74,
                "total_fragments": 645,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Eubacteriales;f__Eubacteriaceae;g__Eubacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.42",
                "min_intra_species_ani": "98.37",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 7,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.325,
        "cell_length": 0.215,
        "doubling_h": null,
        "growth_tmp": 37.0,
        "optimum_tmp": 37.071,
        "optimum_ph": null,
        "genome_size": 2833471.0,
        "gc_content": 41.131,
        "coding_genes": 3227.555,
        "rRNA16S_genes": 6.0,
        "tRNA_genes": 59.583,
        "gram_stain": 1.0,
        "sporulation": 0.0,
        "motility": 0.5,
        "range_salinity": 0.0,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
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    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__Eubacteriales",
        "f__Eubacteriaceae",
        "g__Eubacterium_O",
        "s__Eubacterium_O aggregans"
    ],
    "_genome_taxon": [
        "Eubacterium",
        "aggregans",
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__Eubacteriales",
        "f__Eubacteriaceae",
        "g__Eubacterium_O",
        "s__Eubacterium_O aggregans",
        "Bacteria",
        "Bacillota",
        "A",
        "Clostridia",
        "Eubacteriales",
        "Eubacteriaceae",
        "Eubacterium",
        "O",
        "Eubacterium",
        "O",
        "aggregans"
    ],
    "_meo": [
        {
            "id": "MEO_0000950",
            "label": "landfill"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}