{
    "type": "genome",
    "identifier": "GCA_028708775.1",
    "organism": "Syntrophaceticus schinkii",
    "title": "Syntrophaceticus schinkii",
    "description": "derived from metagenome; incomplete metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "University of Waterloo",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_028708775.1",
        "bioproject": "PRJNA900590",
        "biosample": "SAMN32737534",
        "wgs_master": "JAQVYF000000000.1",
        "refseq_category": "na",
        "taxid": "499207",
        "species_taxid": "499207",
        "organism_name": "Syntrophaceticus schinkii",
        "infraspecific_name": "",
        "isolate": "STF2_143",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2023/02/18",
        "asm_name": "ASM2870877v1",
        "submitter": "University of Waterloo",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/028/708/775/GCA_028708775.1_ASM2870877v1",
        "excluded_from_refseq": "derived from metagenome; incomplete metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2023-02-18",
    "dateModified": "2023-02-18",
    "datePublished": "2023-02-18",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Syntrophaceticus schinkii"
        ],
        "sample_taxid": [
            "499207"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA"
        ],
        "sample_host_location_id": [],
        "data_size": "0.589 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 72.45,
        "contamination": 0.38,
        "strain_heterogeneity": 100.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2041447",
        "Number of Sequences": "193",
        "Longest Sequences (bp)": "90252",
        "N50 (bp)": "15706",
        "Gap Ratio (%)": "0.157241",
        "GCcontent (%)": "47.6",
        "Number of CDSs": "1789",
        "Average Protein Length": "286.3",
        "Coding Ratio (%)": "75.3",
        "Number of rRNAs": "1",
        "Number of tRNAs": "30",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Syntrophaceticus schinkii",
                "strain": "strain=Sp3",
                "accession": "GCA_000946815.1",
                "taxid": 499207,
                "species_taxid": 499207,
                "relation_to_type": "type",
                "validated": true,
                "ani": 98.98,
                "matched_fragments": 539,
                "total_fragments": 581,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Thermacetogenium phaeum",
                "strain": "strain=DSM 12270",
                "accession": "GCA_000519285.1",
                "taxid": 85874,
                "species_taxid": 85874,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.5126,
                "matched_fragments": 60,
                "total_fragments": 581,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thermacetogenium phaeum",
                "strain": "strain=DSM 12270",
                "accession": "GCA_000305935.1",
                "taxid": 85874,
                "species_taxid": 85874,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.4413,
                "matched_fragments": 57,
                "total_fragments": 581,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 72.45,
            "contamination": 0.38,
            "strain_heterogeneity": 100.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000946815.1",
                "gtdb_species": "s__Syntrophaceticus schinkii",
                "ani": 98.98,
                "matched_fragments": 539,
                "total_fragments": 581,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_B;c__Moorellia;o__Thermacetogeniales;f__Thermacetogeniaceae;g__Syntrophaceticus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.42",
                "min_intra_species_ani": "98.16",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 3,
                "status": "conclusive"
            },
            {
                "accession": "GCA_012839645.1",
                "gtdb_species": "s__Syntrophaceticus sp012839645",
                "ani": 85.0026,
                "matched_fragments": 349,
                "total_fragments": 581,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_B;c__Moorellia;o__Thermacetogeniales;f__Thermacetogeniaceae;g__Syntrophaceticus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002397275.1",
                "gtdb_species": "s__Syntrophaceticus sp002397275",
                "ani": 78.6678,
                "matched_fragments": 223,
                "total_fragments": 581,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_B;c__Moorellia;o__Thermacetogeniales;f__Thermacetogeniaceae;g__Syntrophaceticus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002426495.1",
                "gtdb_species": "s__Syntrophaceticus sp002426495",
                "ani": 78.556,
                "matched_fragments": 223,
                "total_fragments": 581,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_B;c__Moorellia;o__Thermacetogeniales;f__Thermacetogeniaceae;g__Syntrophaceticus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_012840405.1",
                "gtdb_species": "s__DTU068 sp012840405",
                "ani": 77.8455,
                "matched_fragments": 120,
                "total_fragments": 581,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_B;c__Moorellia;o__Thermacetogeniales;f__Thermacetogeniaceae;g__DTU068",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_001513545.1",
                "gtdb_species": "s__DTU068 sp001513545",
                "ani": 77.6925,
                "matched_fragments": 135,
                "total_fragments": 581,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_B;c__Moorellia;o__Thermacetogeniales;f__Thermacetogeniaceae;g__DTU068",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.53",
                "min_intra_species_ani": "99.44",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_000305935.1",
                "gtdb_species": "s__Thermacetogenium phaeum",
                "ani": 76.4413,
                "matched_fragments": 57,
                "total_fragments": 581,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_B;c__Moorellia;o__Thermacetogeniales;f__Thermacetogeniaceae;g__Thermacetogenium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.55",
                "min_intra_species_ani": "97.17",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 3,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.302,
        "cell_length": 0.301,
        "doubling_h": null,
        "growth_tmp": 37.0,
        "optimum_tmp": 37.0,
        "optimum_ph": null,
        "genome_size": 3166921.0,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": 1.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 1.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacillota_B",
        "c__DSM-12270",
        "o__Thermacetogeniales",
        "f__Thermacetogeniaceae",
        "g__Syntrophaceticus",
        "s__Syntrophaceticus schinkii"
    ],
    "_genome_taxon": [
        "Syntrophaceticus",
        "schinkii",
        "d__Bacteria",
        "p__Bacillota_B",
        "c__DSM-12270",
        "o__Thermacetogeniales",
        "f__Thermacetogeniaceae",
        "g__Syntrophaceticus",
        "s__Syntrophaceticus schinkii",
        "Bacteria",
        "Bacillota",
        "B",
        "DSM-12270",
        "Thermacetogeniales",
        "Thermacetogeniaceae",
        "Syntrophaceticus",
        "Syntrophaceticus",
        "schinkii"
    ],
    "_meo": [
        {
            "id": "MEO_0000950",
            "label": "landfill"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}