{
    "type": "genome",
    "identifier": "GCA_028708925.1",
    "organism": "Methanosarcinaceae archaeon",
    "title": "Methanosarcinaceae archaeon",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "University of Waterloo",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_028708925.1",
        "bioproject": "PRJNA900590",
        "biosample": "SAMN32737525",
        "wgs_master": "JAQVXW000000000.1",
        "refseq_category": "na",
        "taxid": "1945595",
        "species_taxid": "1945595",
        "organism_name": "Methanosarcinaceae archaeon",
        "infraspecific_name": "",
        "isolate": "STF2_135",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2023/02/18",
        "asm_name": "ASM2870892v1",
        "submitter": "University of Waterloo",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/028/708/925/GCA_028708925.1_ASM2870892v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2023-02-18",
    "dateModified": "2023-02-18",
    "datePublished": "2023-02-18",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Methanosarcinaceae archaeon"
        ],
        "sample_taxid": [
            "1945595"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA"
        ],
        "sample_host_location_id": [],
        "data_size": "0.552 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 78.54,
        "contamination": 4.17,
        "strain_heterogeneity": 100.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1931655",
        "Number of Sequences": "241",
        "Longest Sequences (bp)": "31860",
        "N50 (bp)": "9756",
        "Gap Ratio (%)": "0.056946",
        "GCcontent (%)": "41.8",
        "Number of CDSs": "1587",
        "Average Protein Length": "279.6",
        "Coding Ratio (%)": "68.9",
        "Number of rRNAs": "1",
        "Number of tRNAs": "53",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [],
        "cc_result": {
            "completeness": 78.54,
            "contamination": 4.17,
            "strain_heterogeneity": 100.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_002496565.1",
                "gtdb_species": "s__Methanosarcina sp002496565",
                "ani": 76.1438,
                "matched_fragments": 71,
                "total_fragments": 524,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanosarcinia;o__Methanosarcinales;f__Methanosarcinaceae;g__Methanosarcina",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.74",
                "min_intra_species_ani": "97.33",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 3,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": 0.004,
        "cell_length": 0.104,
        "doubling_h": 0.995,
        "growth_tmp": 35.099,
        "optimum_tmp": 35.929,
        "optimum_ph": 7.179,
        "genome_size": 3357239.159,
        "gc_content": 40.75,
        "coding_genes": 3023.129,
        "rRNA16S_genes": 2.714,
        "tRNA_genes": 53.005,
        "gram_stain": 0.038,
        "sporulation": 0.0,
        "motility": 0.037,
        "range_salinity": 0.75,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 0.777,
        "thermophilic_range_tmp": 0.222,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.03,
        "coccus_cell_shape": 0.969,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Archaea",
        "p__Halobacteriota",
        "c__Methanosarcinia",
        "o__Methanosarcinales",
        "f__Methanosarcinaceae",
        "g__JAQVBP01",
        "s__JAQVBP01 sp028684695"
    ],
    "_genome_taxon": [
        "Methanosarcinaceae",
        "archaeon",
        "d__Archaea",
        "p__Halobacteriota",
        "c__Methanosarcinia",
        "o__Methanosarcinales",
        "f__Methanosarcinaceae",
        "g__JAQVBP01",
        "s__JAQVBP01 sp028684695",
        "Archaea",
        "Halobacteriota",
        "Methanosarcinia",
        "Methanosarcinales",
        "Methanosarcinaceae",
        "JAQVBP01",
        "JAQVBP01",
        "sp028684695"
    ],
    "_meo": [
        {
            "id": "MEO_0000950",
            "label": "landfill"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}