{ "type": "genome", "identifier": "GCA_028710175.1", "organism": "Acinetobacter towneri", "title": "Acinetobacter towneri", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "University of Waterloo", "publication": [ {} ], "properties": { "assembly_accession": "GCA_028710175.1", "bioproject": "PRJNA900590", "biosample": "SAMN32734416", "wgs_master": "JAQUSQ000000000.1", "refseq_category": "na", "taxid": "202956", "species_taxid": "202956", "organism_name": "Acinetobacter towneri", "infraspecific_name": "", "isolate": "STD2_10", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/02/18", "asm_name": "ASM2871017v1", "submitter": "University of Waterloo", "gbrs_paired_asm": "GCF_028710175.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/028/710/175/GCA_028710175.1_ASM2871017v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-02-18", "dateModified": "2023-02-18", "datePublished": "2023-02-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Acinetobacter towneri" ], "sample_taxid": [ "202956" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA" ], "sample_host_location_id": [], "data_size": "0.834 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2921911", "Number of Sequences": "80", "Longest Sequences (bp)": "226285", "N50 (bp)": "59312", "Gap Ratio (%)": "0.000684", "GCcontent (%)": "41.2", "Number of CDSs": "2706", "Average Protein Length": "306.0", "Coding Ratio (%)": "85.0", "Number of rRNAs": "1", "Number of tRNAs": "64", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Acinetobacter towneri", "strain": "strain=DSM 14962", "accession": "GCA_000688495.1", "taxid": 202956, "species_taxid": 202956, "relation_to_type": "type", "validated": true, "ani": 97.743, "matched_fragments": 791, "total_fragments": 932, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Acinetobacter seohaensis", "strain": "strain=DSM 16313", "accession": "GCA_018403785.1", "taxid": 281376, "species_taxid": 281376, "relation_to_type": "type", "validated": true, "ani": 97.6636, "matched_fragments": 745, "total_fragments": 932, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Acinetobacter towneri", "strain": "strain=CIP 107472", "accession": "GCA_000368785.1", "taxid": 202956, "species_taxid": 202956, "relation_to_type": "type", "validated": true, "ani": 97.6018, "matched_fragments": 802, "total_fragments": 932, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Acinetobacter indicus", "strain": "strain=CIP 110367", "accession": "GCA_000488255.1", "taxid": 756892, "species_taxid": 756892, "relation_to_type": "type", "validated": true, "ani": 82.2669, "matched_fragments": 577, "total_fragments": 932, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter indicus", "strain": "strain=DSM 25388", "accession": "GCA_000830155.1", "taxid": 756892, "species_taxid": 756892, "relation_to_type": "type", "validated": true, "ani": 82.1787, "matched_fragments": 556, "total_fragments": 932, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter johnsonii", "strain": "strain=FDAARGOS_910", "accession": "GCA_016027055.1", "taxid": 40214, "species_taxid": 40214, "relation_to_type": "suspected-type", "validated": true, "ani": 81.1162, "matched_fragments": 491, "total_fragments": 932, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter johnsonii", "strain": "strain=NCTC10308", "accession": "GCA_900444855.1", "taxid": 40214, "species_taxid": 40214, "relation_to_type": "suspected-type", "validated": true, "ani": 81.1115, "matched_fragments": 493, "total_fragments": 932, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter tandoii", "strain": "strain=CIP 107469", "accession": "GCA_000400735.1", "taxid": 202954, "species_taxid": 202954, "relation_to_type": "type", "validated": true, "ani": 80.8414, "matched_fragments": 509, "total_fragments": 932, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter johnsonii", "strain": "strain=DSM 6963", "accession": "GCA_000949655.1", "taxid": 40214, "species_taxid": 40214, "relation_to_type": "suspected-type", "validated": true, "ani": 80.8226, "matched_fragments": 478, "total_fragments": 932, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter tandoii", "strain": "strain=DSM 14970", "accession": "GCA_000621065.1", "taxid": 202954, "species_taxid": 202954, "relation_to_type": "type", "validated": true, "ani": 80.8112, "matched_fragments": 505, "total_fragments": 932, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter chengduensis", "strain": "strain=WCHAc060005", "accession": "GCA_003664645.1", "taxid": 2420890, "species_taxid": 2420890, "relation_to_type": "type", "validated": true, "ani": 80.7364, "matched_fragments": 467, "total_fragments": 932, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter terrae", "strain": "strain=ANC 4282", "accession": "GCA_013004375.1", "taxid": 2731247, "species_taxid": 2731247, "relation_to_type": "type", "validated": true, "ani": 80.4679, "matched_fragments": 527, "total_fragments": 932, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter gandensis", "strain": "strain=ANC 4275", "accession": "GCA_001678755.1", "taxid": 1443941, "species_taxid": 1443941, "relation_to_type": "type", "validated": true, "ani": 80.4213, "matched_fragments": 473, "total_fragments": 932, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter bohemicus", "strain": "strain=ANC 3994", "accession": "GCA_000367925.1", "taxid": 1435036, "species_taxid": 1435036, "relation_to_type": "type", "validated": true, "ani": 80.3309, "matched_fragments": 529, "total_fragments": 932, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter pecorum", "strain": "strain=Sa1BUA6", "accession": "GCA_014837015.1", "taxid": 2762215, "species_taxid": 2762215, "relation_to_type": "type", "validated": true, "ani": 80.2147, "matched_fragments": 456, "total_fragments": 932, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter sichuanensis", "strain": "strain=WCHAc060041", "accession": "GCA_003024515.2", "taxid": 2136183, "species_taxid": 2136183, "relation_to_type": "type", "validated": true, "ani": 79.9582, "matched_fragments": 438, "total_fragments": 932, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter haemolyticus", "strain": "strain=NCTC10305", "accession": "GCA_900444835.1", "taxid": 29430, "species_taxid": 29430, "relation_to_type": "type", "validated": true, "ani": 79.5222, "matched_fragments": 347, "total_fragments": 932, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter silvestris", "strain": "strain=ANC 4999", "accession": "GCA_002135235.1", "taxid": 1977882, "species_taxid": 1977882, "relation_to_type": "type", "validated": true, "ani": 79.4424, "matched_fragments": 419, "total_fragments": 932, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter ihumii", "strain": "strain=Marseille-P8049", "accession": "GCA_900625095.1", "taxid": 2483802, "species_taxid": 2483802, "relation_to_type": "type", "validated": true, "ani": 79.1536, "matched_fragments": 380, "total_fragments": 932, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000368785.1", "gtdb_species": "s__Acinetobacter towneri", "ani": 97.6018, "matched_fragments": 802, "total_fragments": 932, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.88", "min_intra_species_ani": "97.09", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.84", "num_clustered_genomes": 48, "status": "conclusive" }, { "accession": "GCF_001758345.1", "gtdb_species": "s__Acinetobacter towneri_A", "ani": 93.7682, "matched_fragments": 761, "total_fragments": 932, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.24", "min_intra_species_ani": "97.24", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.85", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_002296655.1", "gtdb_species": "s__Acinetobacter sp002296655", "ani": 93.1663, "matched_fragments": 670, "total_fragments": 932, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.95", "min_intra_species_ani": "99.95", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_012371325.1", "gtdb_species": "s__Acinetobacter sp012371325", "ani": 89.228, "matched_fragments": 730, "total_fragments": 932, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.91", "min_intra_species_ani": "97.28", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.84", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCF_016599715.1", "gtdb_species": "s__Acinetobacter sp002135245", "ani": 81.2011, "matched_fragments": 524, "total_fragments": 932, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.80", "min_intra_species_ani": "96.56", "mean_intra_species_af": "0.83", "min_intra_species_af": "0.80", "num_clustered_genomes": 8, "status": "-" }, { "accession": "GCF_000368045.1", "gtdb_species": "s__Acinetobacter johnsonii", "ani": 81.0449, "matched_fragments": 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