{ "tc_result": [ { "organism_name": "Treponema succinifaciens", "strain": "strain=DSM 2489", "accession": "GCA_000195275.1", "taxid": 167, "species_taxid": 167, "relation_to_type": "type", "validated": true, "ani": 98.8461, "matched_fragments": 711, "total_fragments": 743, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Treponema berlinense", "strain": "strain=ATCC BAA-909", "accession": "GCA_900167025.1", "taxid": 225004, "species_taxid": 225004, "relation_to_type": "type", "validated": true, "ani": 79.5272, "matched_fragments": 115, "total_fragments": 743, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Treponema peruense", "strain": "strain=RCC2812", "accession": "GCA_016117655.1", "taxid": 2787628, "species_taxid": 2787628, "relation_to_type": "type", "validated": true, "ani": 78.7783, "matched_fragments": 171, "total_fragments": 743, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Treponema rectale", "strain": "strain=DSM 103679", "accession": "GCA_014202035.1", "taxid": 744512, "species_taxid": 744512, "relation_to_type": "suspected-type", "validated": true, "ani": 77.3367, "matched_fragments": 96, "total_fragments": 743, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Treponema porcinum", "strain": "strain=ATCC BAA-908", "accession": "GCA_900167145.1", "taxid": 261392, "species_taxid": 261392, "relation_to_type": "type", "validated": true, "ani": 76.9131, "matched_fragments": 89, "total_fragments": 743, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000195275.1", "gtdb_species": "s__Treponema_D succinifaciens", "ani": 98.8461, "matched_fragments": 711, "total_fragments": 743, "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_D", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.40", "min_intra_species_ani": "98.24", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.91", "num_clustered_genomes": 3, "status": "conclusive" }, { "accession": "GCA_002449305.1", "gtdb_species": "s__Treponema_D sp002449305", "ani": 91.8128, "matched_fragments": 595, "total_fragments": 743, "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_D", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.77", "min_intra_species_ani": "97.10", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.86", "num_clustered_genomes": 10, "status": "-" }, { "accession": "GCF_900167025.1", "gtdb_species": "s__Treponema_D berlinense", "ani": 79.5272, "matched_fragments": 115, "total_fragments": 743, "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_D", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.85", "min_intra_species_ani": "98.81", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.90", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_016117655.1", "gtdb_species": "s__Treponema_D sp900541995", "ani": 78.8386, "matched_fragments": 172, "total_fragments": 743, "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_D", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.86", "min_intra_species_ani": "98.78", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.96", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_018385315.1", "gtdb_species": "s__Treponema_D sp018385315", "ani": 78.0721, "matched_fragments": 52, "total_fragments": 743, "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_D", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017935745.1", "gtdb_species": "s__Treponema_D sp017935745", "ani": 77.5985, "matched_fragments": 232, "total_fragments": 743, "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_D", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016294035.1", "gtdb_species": "s__Treponema_D sp016294035", "ani": 77.3283, "matched_fragments": 126, "total_fragments": 743, "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_D", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.69", "min_intra_species_ani": "98.66", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.91", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_002477955.1", "gtdb_species": "s__Treponema_D sp002477955", "ani": 77.2644, "matched_fragments": 102, "total_fragments": 743, "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_D", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.57", "min_intra_species_ani": "99.37", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.86", "num_clustered_genomes": 7, "status": "-" }, { "accession": "GCA_016293645.1", "gtdb_species": "s__Treponema_D sp016293645", "ani": 77.0849, "matched_fragments": 109, "total_fragments": 743, "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_D", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_902766345.1", "gtdb_species": "s__Treponema_D sp902766345", "ani": 76.8597, "matched_fragments": 58, "total_fragments": 743, "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_D", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016296655.1", "gtdb_species": "s__Treponema_D sp016296655", "ani": 76.6062, "matched_fragments": 82, "total_fragments": 743, "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_D", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000421345.1", "gtdb_species": "s__Treponema_D bryantii_B", "ani": 76.5916, "matched_fragments": 54, "total_fragments": 743, "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_D", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_902772975.1", "gtdb_species": "s__Treponema_D sp902772975", "ani": 76.557, "matched_fragments": 67, "total_fragments": 743, "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_D", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017553635.1", "gtdb_species": "s__Treponema_D sp017553635", "ani": 76.5253, "matched_fragments": 58, "total_fragments": 743, "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_D", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.74", "min_intra_species_ani": "98.74", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.94", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_900767955.1", "gtdb_species": "s__Treponema_D sp900767955", "ani": 75.9787, "matched_fragments": 55, "total_fragments": 743, "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_D", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.06", "min_intra_species_ani": "96.06", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.77", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCA_016282455.1", "gtdb_species": "s__Treponema_D sp016282455", "ani": 75.7642, "matched_fragments": 56, "total_fragments": 743, "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_D", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }