{ "type": "genome", "identifier": "GCA_028721035.1", "organism": "Prevotellaceae bacterium", "title": "Prevotellaceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Agriculture and Agri-Food Canada", "publication": [ {} ], "properties": { "assembly_accession": "GCA_028721035.1", "bioproject": "PRJNA857725", "biosample": "SAMN32799618", "wgs_master": "JAQYJP000000000.1", "refseq_category": "na", "taxid": "2049047", "species_taxid": "2049047", "organism_name": "Prevotellaceae bacterium", "infraspecific_name": "", "isolate": "SUG2004", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/02/18", "asm_name": "ASM2872103v1", "submitter": "Agriculture and Agri-Food Canada", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/028/721/035/GCA_028721035.1_ASM2872103v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-02-18", "dateModified": "2023-02-18", "datePublished": "2023-02-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Prevotellaceae bacterium" ], "sample_taxid": [ "2049047" ], "sample_host_organism": [ "Sus scrofa domesticus" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Canada:Lacombe" ], "sample_host_location_id": [], "data_size": "0.657 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 65.62, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2292368", "Number of Sequences": "247", "Longest Sequences (bp)": "55923", "N50 (bp)": "12692", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "46.5", "Number of CDSs": "1567", "Average Protein Length": "384.6", "Coding Ratio (%)": "78.9", "Number of rRNAs": "0", "Number of tRNAs": "37", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Prevotella pectinovora", "strain": "strain=P4-76", "accession": "GCA_000834015.1", "taxid": 1602169, "species_taxid": 1602169, "relation_to_type": "type", "validated": true, "ani": 76.9425, "matched_fragments": 72, "total_fragments": 631, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Xylanibacter rodentium", "strain": "strain=PROD", "accession": "GCA_013166575.1", "taxid": 2736289, "species_taxid": 2736289, "relation_to_type": "type", "validated": true, "ani": 76.6096, "matched_fragments": 66, "total_fragments": 631, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella ruminicola", "strain": "strain=ATCC 19189", "accession": "GCA_900108375.1", "taxid": 839, "species_taxid": 839, "relation_to_type": "type", "validated": true, "ani": 76.3947, "matched_fragments": 58, "total_fragments": 631, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Xylanibacter muris", "strain": "strain=PMUR", "accession": "GCA_013166605.1", "taxid": 2736290, "species_taxid": 2736290, "relation_to_type": "type", "validated": true, "ani": 76.3636, "matched_fragments": 67, "total_fragments": 631, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella ruminicola", "strain": "strain=Bryant 23", "accession": "GCA_000025925.1", "taxid": 839, "species_taxid": 839, "relation_to_type": "type", "validated": true, "ani": 76.3062, "matched_fragments": 57, "total_fragments": 631, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella brevis", "strain": "strain=ATCC 19188", "accession": "GCA_000621725.1", "taxid": 83231, "species_taxid": 83231, "relation_to_type": "type", "validated": true, "ani": 76.1841, "matched_fragments": 51, "total_fragments": 631, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 65.62, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_002251435.1", "gtdb_species": "s__Prevotella sp002251435", "ani": 77.7457, "matched_fragments": 98, "total_fragments": 631, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002251245.1", "gtdb_species": "s__Prevotella sp002251245", "ani": 77.3775, "matched_fragments": 109, "total_fragments": 631, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.53", "min_intra_species_ani": "98.53", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.91", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_016302965.1", "gtdb_species": "s__Prevotella sp016302965", "ani": 77.1883, "matched_fragments": 100, "total_fragments": 631, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_900315765.1", "gtdb_species": "s__Prevotella sp900315765", "ani": 76.5377, "matched_fragments": 54, "total_fragments": 631, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.26", "min_intra_species_ani": "97.63", "mean_intra_species_af": "0.83", "min_intra_species_af": "0.78", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCA_905216025.1", "gtdb_species": "s__Prevotella sp905216025", "ani": 76.4986, "matched_fragments": 84, "total_fragments": 631, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.83", "min_intra_species_ani": "95.83", "mean_intra_species_af": "0.83", "min_intra_species_af": "0.83", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_013166545.1", "gtdb_species": "s__Prevotella sp013166545", "ani": 76.4937, "matched_fragments": 67, "total_fragments": 631, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.93", "min_intra_species_ani": "99.88", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.97", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCF_016899955.1", "gtdb_species": "s__Prevotella sp900540415", "ani": 76.415, "matched_fragments": 80, "total_fragments": 631, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.44", "min_intra_species_ani": "98.08", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.91", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCA_017410365.1", "gtdb_species": "s__Prevotella sp017410365", "ani": 76.4112, "matched_fragments": 72, "total_fragments": 631, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.93", "min_intra_species_ani": "96.60", "mean_intra_species_af": "0.79", "min_intra_species_af": "0.74", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_013166605.1", "gtdb_species": "s__Prevotella sp013166605", "ani": 76.3636, "matched_fragments": 67, "total_fragments": 631, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.90", "min_intra_species_ani": "99.90", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_900770395.1", "gtdb_species": "s__Prevotella sp900770395", "ani": 76.2694, "matched_fragments": 76, "total_fragments": 631, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.78", "min_intra_species_ani": "95.78", "mean_intra_species_af": "0.79", "min_intra_species_af": "0.79", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_900317305.1", "gtdb_species": "s__Prevotella sp900317305", "ani": 76.2589, "matched_fragments": 60, "total_fragments": 631, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.38", "min_intra_species_ani": "97.82", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.83", "num_clustered_genomes": 11, "status": "-" }, { "accession": "GCA_900553965.1", "gtdb_species": "s__Prevotella sp900553965", "ani": 76.0839, "matched_fragments": 50, "total_fragments": 631, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.57", "min_intra_species_ani": "97.60", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.85", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_002353525.1", "gtdb_species": "s__Prevotella sp002353525", "ani": 75.8231, "matched_fragments": 56, "total_fragments": 631, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_902786665.1", "gtdb_species": "s__Prevotella sp902786665", "ani": 75.7749, "matched_fragments": 54, "total_fragments": 631, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.72", "min_intra_species_ani": "98.72", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.89", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.225, "cell_length": 0.118, "doubling_h": null, "growth_tmp": 36.775, "optimum_tmp": 35.358, "optimum_ph": 7.1, "genome_size": 3057162.545, "gc_content": 45.298, "coding_genes": 2508.172, "rRNA16S_genes": 4.0, "tRNA_genes": 50.875, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 1.0, "aerobic_respiration": 0.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.976, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.023, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Bacteroidota", "c__Bacteroidia", "o__Bacteroidales", "f__Bacteroidaceae", "g__Prevotella", "s__Prevotella sp022782305" ], "_genome_taxon": [ "Prevotellaceae", "bacterium", "d__Bacteria", "p__Bacteroidota", "c__Bacteroidia", "o__Bacteroidales", "f__Bacteroidaceae", "g__Prevotella", "s__Prevotella sp022782305", "Bacteria", "Bacteroidota", "Bacteroidia", "Bacteroidales", "Bacteroidaceae", "Prevotella", "Prevotella", "sp022782305" ], "_meo": [ { "id": "MEO_0000054", "label": "feces" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }