{ "type": "genome", "identifier": "GCA_028820765.1", "organism": "Caldilineaceae bacterium", "title": "Caldilineaceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Australian Centre for Ecogenomics", "publication": [ {} ], "properties": { "assembly_accession": "GCA_028820765.1", "bioproject": "PRJNA602572", "biosample": "SAMN15855433", "wgs_master": "JAPPHX000000000.1", "refseq_category": "na", "taxid": "2614250", "species_taxid": "2614250", "organism_name": "Caldilineaceae bacterium", "infraspecific_name": "", "isolate": "RHO1_bin_93", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/02/23", "asm_name": "ASM2882076v1", "submitter": "Australian Centre for Ecogenomics", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/028/820/765/GCA_028820765.1_ASM2882076v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-02-23", "dateModified": "2023-02-23", "datePublished": "2023-02-23", "_annotation": { "sample_count": 1, "sample_organism": [ "Caldilineaceae bacterium" ], "sample_taxid": [ "2614250" ], "sample_host_organism": [ "Rhopaloeides odorabile" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Australia: Davies Reef" ], "sample_host_location_id": [], "data_size": "0.879 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 53.31, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3041144", "Number of Sequences": "426", "Longest Sequences (bp)": "41725", "N50 (bp)": "9483", "Gap Ratio (%)": "0.183155", "GCcontent (%)": "58.6", "Number of CDSs": "2281", "Average Protein Length": "321.0", "Coding Ratio (%)": "72.2", "Number of rRNAs": "0", "Number of tRNAs": "23", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [], "cc_result": { "completeness": 53.31, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_011523365.1", "gtdb_species": "s__Bin5 sp011523365", "ani": 85.7893, "matched_fragments": 588, "total_fragments": 787, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Caldilineales;f__Caldilineaceae;g__Bin5", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_009840225.1", "gtdb_species": "s__Bin5 sp009840225", "ani": 85.0583, 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"d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Caldilineales;f__Caldilineaceae;g__Bin5", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.90", "min_intra_species_ani": "99.90", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.97", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_002238445.1", "gtdb_species": "s__Bin5 sp002238445", "ani": 79.2347, "matched_fragments": 357, "total_fragments": 787, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Caldilineales;f__Caldilineaceae;g__Bin5", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.302, "cell_length": -0.155, "doubling_h": 0.906, "growth_tmp": 54.666, "optimum_tmp": 55.0, "optimum_ph": 7.5, "genome_size": 5143605.4, "gc_content": 58.8, "coding_genes": 4056.0, "rRNA16S_genes": 2.0, "tRNA_genes": 47.0, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.333, "anaerobic_respiration": 0.333, "aerobic_respiration": 0.333, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Chloroflexota", "c__Anaerolineae", "o__Caldilineales", "f__Caldilineaceae", "g__Bin5", "s__Bin5 sp026708085" ], "_genome_taxon": [ "Caldilineaceae", "bacterium", "d__Bacteria", "p__Chloroflexota", "c__Anaerolineae", "o__Caldilineales", "f__Caldilineaceae", "g__Bin5", "s__Bin5 sp026708085", "Bacteria", "Chloroflexota", "Anaerolineae", "Caldilineales", "Caldilineaceae", "Bin5", "Bin5", "sp026708085" ], "_meo": [ { "id": "MEO_0002677", "label": "sponge" }, { "id": "MEO_0000023", "label": "sea" } ], "quality": 2, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f" }