{ "type": "genome", "identifier": "GCA_028821045.1", "organism": "Alphaproteobacteria bacterium", "title": "Alphaproteobacteria bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Australian Centre for Ecogenomics", "publication": [ {} ], "properties": { "assembly_accession": "GCA_028821045.1", "bioproject": "PRJNA602572", "biosample": "SAMN15855422", "wgs_master": "JAPPHN000000000.1", "refseq_category": "na", "taxid": "1913988", "species_taxid": "1913988", "organism_name": "Alphaproteobacteria bacterium", "infraspecific_name": "", "isolate": "RHO1_bin_82", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/02/23", "asm_name": "ASM2882104v1", "submitter": "Australian Centre for Ecogenomics", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/028/821/045/GCA_028821045.1_ASM2882104v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-02-23", "dateModified": "2023-02-23", "datePublished": "2023-02-23", "_annotation": { "sample_count": 1, "sample_organism": [ "Alphaproteobacteria bacterium" ], "sample_taxid": [ "1913988" ], "sample_host_organism": [ "Rhopaloeides odorabile" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Australia: Davies Reef" ], "sample_host_location_id": [], "data_size": "1.170 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 87.5, "contamination": 0.46, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4221250", "Number of Sequences": "678", "Longest Sequences (bp)": "34190", "N50 (bp)": "7713", "Gap Ratio (%)": "0.288303", "GCcontent (%)": "68.6", "Number of CDSs": "3515", "Average Protein Length": "293.4", "Coding Ratio (%)": "73.3", "Number of rRNAs": "0", "Number of tRNAs": "40", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Oceanibaculum indicum", "strain": "strain=P24", "accession": "GCA_000299935.1", "taxid": 526216, "species_taxid": 526216, "relation_to_type": "type", "validated": true, "ani": 76.6225, "matched_fragments": 179, "total_fragments": 1064, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oceanibaculum nanhaiense", "strain": "strain=L54-1-50", "accession": "GCA_002148795.1", "taxid": 1909734, "species_taxid": 1909734, "relation_to_type": "type", "validated": true, "ani": 76.6173, "matched_fragments": 172, "total_fragments": 1064, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hypericibacter terrae", "strain": "strain=R5913", "accession": "GCA_008728855.1", "taxid": 2602015, "species_taxid": 2602015, "relation_to_type": "type", "validated": true, "ani": 76.5944, "matched_fragments": 200, "total_fragments": 1064, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hypericibacter adhaerens", "strain": "strain=R5959", "accession": "GCA_008728835.1", "taxid": 2602016, "species_taxid": 2602016, "relation_to_type": "type", "validated": true, "ani": 76.5642, "matched_fragments": 232, "total_fragments": 1064, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oceanibaculum pacificum", "strain": "strain=MCCC 1A02656", "accession": "GCA_001618175.1", "taxid": 580166, "species_taxid": 580166, "relation_to_type": "type", "validated": true, "ani": 76.4947, "matched_fragments": 178, "total_fragments": 1064, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagibius marinus", "strain": "strain=NBU2595", "accession": "GCA_014925385.1", "taxid": 2762760, "species_taxid": 2762760, "relation_to_type": "type", "validated": true, "ani": 76.4043, "matched_fragments": 188, "total_fragments": 1064, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Inquilinus limosus", "strain": "strain=DSM 16000", "accession": "GCA_000423185.1", "taxid": 171674, "species_taxid": 171674, "relation_to_type": "type", "validated": true, "ani": 76.3571, "matched_fragments": 251, "total_fragments": 1064, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodobium orientis", "strain": "strain=DSM 11290", "accession": "GCA_003258835.1", "taxid": 34017, "species_taxid": 34017, "relation_to_type": "type", "validated": true, "ani": 76.2895, "matched_fragments": 181, "total_fragments": 1064, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stella humosa", "strain": "strain=ATCC 43930", "accession": "GCA_006738645.1", "taxid": 94, "species_taxid": 94, "relation_to_type": "type", "validated": true, "ani": 76.2865, "matched_fragments": 245, "total_fragments": 1064, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tistlia consotensis", "strain": "strain=DSM 21585", "accession": "GCA_900188055.1", "taxid": 1321365, "species_taxid": 1321365, "relation_to_type": "type", "validated": true, "ani": 76.2809, "matched_fragments": 282, "total_fragments": 1064, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodobium orientis", "strain": "strain=DSM 11290", "accession": "GCA_014197785.1", "taxid": 34017, "species_taxid": 34017, "relation_to_type": "type", "validated": true, "ani": 76.2655, "matched_fragments": 182, "total_fragments": 1064, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodobium orientis", "strain": "strain=DSM 11290", "accession": "GCA_016653375.1", "taxid": 34017, "species_taxid": 34017, "relation_to_type": "type", "validated": true, "ani": 76.2612, "matched_fragments": 181, "total_fragments": 1064, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tistlia consotensis", "strain": "strain=USBA 355", "accession": "GCA_900177295.1", "taxid": 1321365, "species_taxid": 1321365, "relation_to_type": "type", "validated": true, "ani": 76.2527, "matched_fragments": 282, "total_fragments": 1064, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nisaea acidiphila", "strain": "strain=MEBiC11861", "accession": "GCA_024662015.1", "taxid": 1862145, "species_taxid": 1862145, "relation_to_type": "type", "validated": true, "ani": 76.2444, "matched_fragments": 149, "total_fragments": 1064, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stella humosa", "strain": "strain=DSM 5900", "accession": "GCA_003751345.1", "taxid": 94, "species_taxid": 94, "relation_to_type": "type", "validated": true, "ani": 76.2415, "matched_fragments": 250, "total_fragments": 1064, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovastum atsumiense", "strain": "strain=G2-11", "accession": "GCA_937425535.1", "taxid": 504468, "species_taxid": 504468, "relation_to_type": "type", "validated": true, "ani": 76.2074, "matched_fragments": 177, "total_fragments": 1064, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospirillum soli", "strain": "strain=CC-LY788", "accession": "GCA_017876165.1", "taxid": 1304799, "species_taxid": 1304799, "relation_to_type": "type", "validated": true, "ani": 76.1164, "matched_fragments": 173, "total_fragments": 1064, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospirillum oleiclasticum", "strain": "strain=RWY-5-1-1", "accession": "GCA_013423485.1", "taxid": 2735135, "species_taxid": 2735135, "relation_to_type": "type", "validated": true, "ani": 75.9938, "matched_fragments": 217, "total_fragments": 1064, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas alkaliterrae", "strain": "strain=DSM 25895", "accession": "GCA_014199195.1", "taxid": 1452450, "species_taxid": 1452450, "relation_to_type": "type", "validated": true, "ani": 75.9866, "matched_fragments": 203, "total_fragments": 1064, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospirillum thermophilum", "strain": "strain=CFH 70021", "accession": "GCA_003130795.1", "taxid": 2202148, "species_taxid": 2202148, "relation_to_type": "type", "validated": true, "ani": 75.9738, "matched_fragments": 245, "total_fragments": 1064, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Caenispirillum salinarum", "strain": "strain=AK4", "accession": "GCA_000315795.1", "taxid": 859058, "species_taxid": 859058, "relation_to_type": "type", "validated": true, "ani": 75.9496, "matched_fragments": 159, "total_fragments": 1064, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovarius lipocyclicus", "strain": "strain=CCUG 44693", "accession": "GCA_009900765.1", "taxid": 268410, "species_taxid": 268410, "relation_to_type": "type", "validated": true, "ani": 75.9401, "matched_fragments": 136, "total_fragments": 1064, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lutibaculum baratangense", "strain": "strain=AMV1", "accession": "GCA_000496075.1", "taxid": 1358440, "species_taxid": 1358440, "relation_to_type": "type", "validated": true, "ani": 75.9352, "matched_fragments": 128, "total_fragments": 1064, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospirillum rugosum", "strain": "strain=IMMIB AFH-6", "accession": "GCA_017876155.1", "taxid": 416170, "species_taxid": 416170, "relation_to_type": "type", "validated": true, "ani": 75.9186, "matched_fragments": 235, "total_fragments": 1064, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodoligotrophos defluvii", "strain": "strain=lm1", "accession": "GCA_005281615.1", "taxid": 2561934, "species_taxid": 2561934, "relation_to_type": "type", "validated": true, "ani": 75.8765, "matched_fragments": 113, "total_fragments": 1064, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cereibacter azotoformans", "strain": "strain=KA25", "accession": "GCA_003050905.1", "taxid": 43057, "species_taxid": 43057, "relation_to_type": "type", "validated": true, "ani": 75.8656, "matched_fragments": 114, "total_fragments": 1064, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas rubea", "strain": "strain=MO17", "accession": "GCA_016106015.1", "taxid": 2748666, "species_taxid": 2748666, "relation_to_type": "type", "validated": true, "ani": 75.8417, "matched_fragments": 180, "total_fragments": 1064, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cereibacter sediminicola", "strain": "strain=JA983", "accession": 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"species_taxid": 2013562, "relation_to_type": "type", "validated": true, "ani": 75.7418, "matched_fragments": 196, "total_fragments": 1064, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 87.5, "contamination": 0.46, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCA_002238885.1", "gtdb_species": "s__Bin95 sp002238885", "ani": 86.0613, "matched_fragments": 494, "total_fragments": 1064, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Bin95;f__Bin95;g__Bin95", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900102465.1", "gtdb_species": "s__Thalassobaculum litoreum", "ani": 76.746, "matched_fragments": 197, "total_fragments": 1064, "gtdb_taxonomy": 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