{ "type": "genome", "identifier": "GCA_028821345.1", "organism": "Chromatiales bacterium", "title": "Chromatiales bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Australian Centre for Ecogenomics", "publication": [ {} ], "properties": { "assembly_accession": "GCA_028821345.1", "bioproject": "PRJNA602572", "biosample": "SAMN15855395", "wgs_master": "JAPPGN000000000.1", "refseq_category": "na", "taxid": "2026725", "species_taxid": "2026725", "organism_name": "Chromatiales bacterium", "infraspecific_name": "", "isolate": "RHO1_bin_57", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/02/23", "asm_name": "ASM2882134v1", "submitter": "Australian Centre for Ecogenomics", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/028/821/345/GCA_028821345.1_ASM2882134v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-02-23", "dateModified": "2023-02-23", "datePublished": "2023-02-23", "_annotation": { "sample_count": 1, "sample_organism": [ "Chromatiales bacterium" ], "sample_taxid": [ "2026725" ], "sample_host_organism": [ "Rhopaloeides odorabile" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Australia: Davies Reef" ], "sample_host_location_id": [], "data_size": "1.529 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "5508367", "Number of Sequences": "671", "Longest Sequences (bp)": "51512", "N50 (bp)": "12299", "Gap Ratio (%)": "0.047201", "GCcontent (%)": "68.1", "Number of CDSs": "4609", "Average Protein Length": "311.2", "Coding Ratio (%)": "78.1", "Number of rRNAs": "0", "Number of tRNAs": "39", "Number of CRISPRs": "9" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Sulfurifustis variabilis", "strain": "strain=skN76", "accession": "GCA_002355415.1", "taxid": 1675686, "species_taxid": 1675686, "relation_to_type": "type", "validated": true, "ani": 76.0323, "matched_fragments": 103, "total_fragments": 1492, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylococcus geothermalis", "strain": "strain=IM1", "accession": "GCA_012769535.1", "taxid": 2681310, "species_taxid": 2681310, "relation_to_type": "type", "validated": true, "ani": 76.0279, "matched_fragments": 53, "total_fragments": 1492, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Inmirania thermothiophila", "strain": "strain=DSM 100275", "accession": "GCA_003751635.1", "taxid": 1750597, "species_taxid": 1750597, "relation_to_type": "type", "validated": true, "ani": 75.9942, "matched_fragments": 177, "total_fragments": 1492, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marichromatium gracile", "strain": "strain=DSM 203", "accession": "GCA_004343155.1", "taxid": 1048, "species_taxid": 1048, "relation_to_type": "type", "validated": true, "ani": 75.9785, "matched_fragments": 121, "total_fragments": 1492, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas sulfidoxydans", "strain": "strain=MCCC 1A11059", "accession": "GCA_017868775.1", "taxid": 2733484, "species_taxid": 2733484, "relation_to_type": "type", "validated": true, "ani": 75.9496, "matched_fragments": 104, "total_fragments": 1492, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter arseniciresistens", "strain": "strain=ZS79", "accession": "GCA_000768335.1", "taxid": 1385522, "species_taxid": 1385522, "relation_to_type": "type", "validated": true, "ani": 75.9312, "matched_fragments": 92, "total_fragments": 1492, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thioalkalivibrio paradoxus", "strain": "strain=ARh 1", "accession": "GCA_000227685.3", "taxid": 108010, "species_taxid": 108010, "relation_to_type": "type", "validated": true, "ani": 75.9229, "matched_fragments": 79, "total_fragments": 1492, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marichromatium gracile", "strain": "strain=DSM 203", "accession": "GCA_016583515.1", "taxid": 1048, "species_taxid": 1048, "relation_to_type": "type", "validated": true, "ani": 75.9102, "matched_fragments": 122, "total_fragments": 1492, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thiohalobacter thiocyanaticus", "strain": "strain=Hrh1", "accession": "GCA_003932505.1", "taxid": 585455, "species_taxid": 585455, "relation_to_type": "type", "validated": true, "ani": 75.8798, "matched_fragments": 80, "total_fragments": 1492, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas aquatica", "strain": "strain=RIB1-20", "accession": "GCA_022662575.1", "taxid": 450364, "species_taxid": 450364, "relation_to_type": "type", "validated": true, "ani": 75.8729, "matched_fragments": 123, "total_fragments": 1492, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halochromatium glycolicum", "strain": "strain=DSM 11080", "accession": "GCA_016584085.1", "taxid": 85075, "species_taxid": 85075, "relation_to_type": "type", "validated": true, "ani": 75.8384, "matched_fragments": 76, "total_fragments": 1492, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas saliphila", "strain": "strain=SJ-9", "accession": "GCA_016774335.1", "taxid": 2804919, "species_taxid": 2804919, "relation_to_type": "type", "validated": true, "ani": 75.7899, "matched_fragments": 105, "total_fragments": 1492, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas oryzae", "strain": "strain=KCTC 32247", "accession": "GCA_900104805.1", "taxid": 1392877, "species_taxid": 1392877, "relation_to_type": "type", "validated": true, "ani": 75.7389, "matched_fragments": 133, "total_fragments": 1492, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas aromaticivorans", "strain": "strain=MAP12", "accession": "GCA_019097855.1", "taxid": 2849492, "species_taxid": 2849492, "relation_to_type": "type", "validated": true, "ani": 75.7151, "matched_fragments": 86, "total_fragments": 1492, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidihalobacter prosperus", "strain": "strain=DSM 5130", "accession": "GCA_000754095.2", "taxid": 160660, "species_taxid": 160660, "relation_to_type": "type", "validated": true, "ani": 75.706, "matched_fragments": 61, "total_fragments": 1492, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Frateuria flava", "strain": "strain=MAH-13", "accession": "GCA_017837635.1", "taxid": 2821489, "species_taxid": 2821489, "relation_to_type": "type", "validated": true, "ani": 75.7056, "matched_fragments": 75, "total_fragments": 1492, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas viscosa", "strain": "strain=XBU10", "accession": "GCA_008244685.1", "taxid": 1132694, "species_taxid": 1132694, "relation_to_type": "type", "validated": true, "ani": 75.6751, "matched_fragments": 108, "total_fragments": 1492, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thauera phenolivorans", "strain": "strain=ZV1C", "accession": "GCA_001696715.1", "taxid": 1792543, "species_taxid": 1792543, "relation_to_type": "type", "validated": true, "ani": 75.6612, "matched_fragments": 131, "total_fragments": 1492, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dokdonella koreensis", "strain": "strain=DS-123", "accession": "GCA_001632775.1", "taxid": 323415, "species_taxid": 323415, "relation_to_type": "type", "validated": true, "ani": 75.6605, "matched_fragments": 116, "total_fragments": 1492, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidihalobacter aeolianus", "strain": "strain=V6", "accession": "GCA_001753165.1", "taxid": 2792603, "species_taxid": 2792603, "relation_to_type": "type", "validated": true, "ani": 75.6302, "matched_fragments": 60, "total_fragments": 1492, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Crenobacter luteus", "strain": "strain=DSM 27258", "accession": "GCA_004345725.1", "taxid": 1452487, "species_taxid": 1452487, "relation_to_type": "type", "validated": true, "ani": 75.5827, "matched_fragments": 99, "total_fragments": 1492, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Solimonas 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"GCA_010093135.1", "taxid": 176598, "species_taxid": 176598, "relation_to_type": "type", "validated": true, "ani": 75.5066, "matched_fragments": 104, "total_fragments": 1492, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas organivorans", "strain": "strain=CECT 5995", "accession": "GCA_014192055.1", "taxid": 257772, "species_taxid": 257772, "relation_to_type": "type", "validated": true, "ani": 75.5033, "matched_fragments": 100, "total_fragments": 1492, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fulvimonas soli", "strain": "strain=LMG 19981", "accession": "GCA_006352285.1", "taxid": 155197, "species_taxid": 155197, "relation_to_type": "type", "validated": true, "ani": 75.4944, "matched_fragments": 143, "total_fragments": 1492, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Crenobacter cavernae", "strain": "strain=K1W11S-77", "accession": "GCA_003355495.1", "taxid": 2290923, "species_taxid": 2290923, "relation_to_type": "type", "validated": true, "ani": 75.438, "matched_fragments": 86, "total_fragments": 1492, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cupriavidus malaysiensis", "strain": "strain=USMAA1020", "accession": "GCA_001854325.1", "taxid": 367825, "species_taxid": 367825, "relation_to_type": "type", "validated": true, "ani": 75.4379, "matched_fragments": 159, "total_fragments": 1492, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas lalucatii", "strain": "strain=R1b54", "accession": "GCA_018398425.1", "taxid": 1424203, "species_taxid": 1424203, "relation_to_type": "type", "validated": true, "ani": 75.3908, "matched_fragments": 108, "total_fragments": 1492, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chromobacterium alticapitis", "strain": "strain=MWU14-2602", "accession": "GCA_002924365.1", "taxid": 2073169, "species_taxid": 2073169, "relation_to_type": "type", "validated": true, 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1492, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Derxia gummosa", "strain": "strain=DSM 723", "accession": "GCA_000482785.1", "taxid": 203699, "species_taxid": 203699, "relation_to_type": "type", "validated": true, "ani": 75.0908, "matched_fragments": 141, "total_fragments": 1492, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter aloeverae", "strain": "strain=AVA-1", "accession": "GCA_004121055.1", "taxid": 1750518, "species_taxid": 1750518, "relation_to_type": "type", "validated": true, "ani": 75.0595, "matched_fragments": 92, "total_fragments": 1492, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_011321775.1", "gtdb_species": "s__Thiogranum sp011321775", "ani": 76.697, "matched_fragments": 62, "total_fragments": 1492, "gtdb_taxonomy": 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