{
    "type": "genome",
    "identifier": "GCA_028821635.1",
    "organism": "Ekhidna sp.",
    "title": "Ekhidna sp.",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "Australian Centre for Ecogenomics",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_028821635.1",
        "bioproject": "PRJNA602572",
        "biosample": "SAMN15855313",
        "wgs_master": "JAPPDO000000000.1",
        "refseq_category": "na",
        "taxid": "2608089",
        "species_taxid": "2608089",
        "organism_name": "Ekhidna sp.",
        "infraspecific_name": "",
        "isolate": "IRC4_bin_29",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2023/02/23",
        "asm_name": "ASM2882163v1",
        "submitter": "Australian Centre for Ecogenomics",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/028/821/635/GCA_028821635.1_ASM2882163v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2023-02-23",
    "dateModified": "2023-02-23",
    "datePublished": "2023-02-23",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Ekhidna sp."
        ],
        "sample_taxid": [
            "2608089"
        ],
        "sample_host_organism": [
            "Ircinia ramosa"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Australia: Davies Reef"
        ],
        "sample_host_location_id": [],
        "data_size": "0.768 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.83,
        "contamination": 1.39,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2654085",
        "Number of Sequences": "456",
        "Longest Sequences (bp)": "27300",
        "N50 (bp)": "6857",
        "Gap Ratio (%)": "0.040504",
        "GCcontent (%)": "40.3",
        "Number of CDSs": "2095",
        "Average Protein Length": "299.6",
        "Coding Ratio (%)": "70.9",
        "Number of rRNAs": "2",
        "Number of tRNAs": "25",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [],
        "cc_result": {
            "completeness": 95.83,
            "contamination": 1.39,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_014323825.1",
                "gtdb_species": "s__Ekhidna sp014323825",
                "ani": 80.1226,
                "matched_fragments": 398,
                "total_fragments": 641,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__Ekhidna",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.76",
                "min_intra_species_ani": "98.71",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 3,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": 29.0,
        "optimum_tmp": 30.0,
        "optimum_ph": 8.0,
        "genome_size": 4228306.0,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacteroidota",
        "c__Bacteroidia",
        "o__Cytophagales",
        "f__Cyclobacteriaceae",
        "g__Ekhidna",
        "s__Ekhidna sp028821635"
    ],
    "_genome_taxon": [
        "Ekhidna",
        "sp.",
        "d__Bacteria",
        "p__Bacteroidota",
        "c__Bacteroidia",
        "o__Cytophagales",
        "f__Cyclobacteriaceae",
        "g__Ekhidna",
        "s__Ekhidna sp028821635",
        "Bacteria",
        "Bacteroidota",
        "Bacteroidia",
        "Cytophagales",
        "Cyclobacteriaceae",
        "Ekhidna",
        "Ekhidna",
        "sp028821635"
    ],
    "_meo": [
        {
            "id": "MEO_0002677",
            "label": "sponge"
        },
        {
            "id": "MEO_0000023",
            "label": "sea"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}