{ "type": "genome", "identifier": "GCA_028821685.1", "organism": "Opitutales bacterium", "title": "Opitutales bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Palmer LTER", "publication": [ {} ], "properties": { "assembly_accession": "GCA_028821685.1", "bioproject": "PRJNA894514", "biosample": "SAMN31464356", "wgs_master": "JAPKFH000000000.1", "refseq_category": "na", "taxid": "2026772", "species_taxid": "2026772", "organism_name": "Opitutales bacterium", "infraspecific_name": "", "isolate": "ANT-137", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/02/23", "asm_name": "ASM2882168v1", "submitter": "Palmer LTER", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/028/821/685/GCA_028821685.1_ASM2882168v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-02-23", "dateModified": "2023-02-23", "datePublished": "2023-02-23", "_annotation": { "sample_count": 1, "sample_organism": [ "Opitutales bacterium" ], "sample_taxid": [ "2026772" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Antarctica: West Antarctic Peninsula" ], "sample_host_location_id": [], "data_size": "0.978 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 99.48, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3366331", "Number of Sequences": "485", "Longest Sequences (bp)": "39998", "N50 (bp)": "9513", 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"d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Opitutales;f__MB11C04;g__MB11C04", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.248, "cell_length": -0.398, "doubling_h": null, "growth_tmp": 36.5, "optimum_tmp": null, "optimum_ph": 7.75, "genome_size": 5272321.702, "gc_content": 65.092, "coding_genes": 4656.944, "rRNA16S_genes": 1.0, "tRNA_genes": 51.333, "gram_stain": 0.0, "sporulation": 0.0, "motility": 1.0, "range_salinity": null, "facultative_respiration": 0.5, "anaerobic_respiration": 0.25, "aerobic_respiration": 0.25, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.0, "coccus_cell_shape": 1.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Verrucomicrobiota", "c__Verrucomicrobiae", "o__Opitutales", "f__MB11C04", "g__GCA-2730975", "s__GCA-2730975 sp905612515" ], "_genome_taxon": [ "Opitutales", "bacterium", "d__Bacteria", "p__Verrucomicrobiota", "c__Verrucomicrobiae", "o__Opitutales", "f__MB11C04", "g__GCA-2730975", "s__GCA-2730975 sp905612515", "Bacteria", "Verrucomicrobiota", "Verrucomicrobiae", "Opitutales", "MB11C04", "GCA-2730975", "GCA-2730975", "sp905612515" ], "_meo": [ { "id": "MEO_0000041", "label": "marine water" }, { "id": "MEO_0001267", "label": "antarctic" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }