{
    "type": "genome",
    "identifier": "GCA_028982425.1",
    "organism": "Trichodesmium sp. St17_bin3_1_1",
    "title": "Trichodesmium sp. St17_bin3_1_1",
    "description": "derived from metagenome; fragmented assembly",
    "data type": "Genome sequencing and assembly",
    "organization": "University of Southern California",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_028982425.1",
        "bioproject": "PRJNA828267",
        "biosample": "SAMN29146513",
        "wgs_master": "JAPWJK000000000.1",
        "refseq_category": "na",
        "taxid": "2954179",
        "species_taxid": "2954179",
        "organism_name": "Trichodesmium sp. St17_bin3_1_1",
        "infraspecific_name": "",
        "isolate": "St17_bin3_1_1",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2023/03/03",
        "asm_name": "ASM2898242v1",
        "submitter": "University of Southern California",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/028/982/425/GCA_028982425.1_ASM2898242v1",
        "excluded_from_refseq": "derived from metagenome; fragmented assembly",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2023-03-03",
    "dateModified": "2023-03-03",
    "datePublished": "2023-03-03",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Trichodesmium sp. St17_bin3_1_1"
        ],
        "sample_taxid": [
            "2954179"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Atlantic Ocean"
        ],
        "sample_host_location_id": [],
        "data_size": "1.381 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 52.82,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "4832053",
        "Number of Sequences": "2116",
        "Longest Sequences (bp)": "12309",
        "N50 (bp)": "2546",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "34.2",
        "Number of CDSs": "2508",
        "Average Protein Length": "237.7",
        "Coding Ratio (%)": "37.0",
        "Number of rRNAs": "0",
        "Number of tRNAs": "17",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Okeania hirsuta",
                "strain": "strain=PAB10Feb10-1",
                "accession": "GCA_003838195.1",
                "taxid": 1458930,
                "species_taxid": 1458930,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.2227,
                "matched_fragments": 362,
                "total_fragments": 493,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 52.82,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000014265.1",
                "gtdb_species": "s__Trichodesmium erythraeum",
                "ani": 87.4751,
                "matched_fragments": 425,
                "total_fragments": 493,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Microcoleaceae;g__Trichodesmium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.96",
                "min_intra_species_ani": "99.96",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_010672085.1",
                "gtdb_species": "s__Trichodesmium sp010672085",
                "ani": 84.6672,
                "matched_fragments": 424,
                "total_fragments": 493,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Microcoleaceae;g__Trichodesmium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003838195.1",
                "gtdb_species": "s__Okeania hirsuta",
                "ani": 81.2344,
                "matched_fragments": 361,
                "total_fragments": 493,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Microcoleaceae;g__Okeania",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.05",
                "min_intra_species_ani": "95.33",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 10,
                "status": "-"
            },
            {
                "accession": "GCF_014132355.1",
                "gtdb_species": "s__Okeania sp014132355",
                "ani": 81.113,
                "matched_fragments": 380,
                "total_fragments": 493,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Microcoleaceae;g__Okeania",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_010672455.1",
                "gtdb_species": "s__Okeania sp010672455",
                "ani": 81.0759,
                "matched_fragments": 391,
                "total_fragments": 493,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Microcoleaceae;g__Okeania",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_010672585.1",
                "gtdb_species": "s__Okeania sp010672585",
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                "matched_fragments": 376,
                "total_fragments": 493,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Microcoleaceae;g__Okeania",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_010672525.1",
                "gtdb_species": "s__Okeania sp010672525",
                "ani": 80.9596,
                "matched_fragments": 382,
                "total_fragments": 493,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Microcoleaceae;g__Okeania",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_010692555.1",
                "gtdb_species": "s__Okeania sp010692555",
                "ani": 80.9424,
                "matched_fragments": 389,
                "total_fragments": 493,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Microcoleaceae;g__Okeania",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": 3286556.0,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 0.0,
        "sporulation": null,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 1.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Cyanobacteriota",
        "c__Cyanobacteriia",
        "o__Cyanobacteriales",
        "f__Microcoleaceae",
        "g__Trichodesmium",
        "s__Trichodesmium sp023356605"
    ],
    "_genome_taxon": [
        "Trichodesmium",
        "sp.",
        "St17_bin3_1_1",
        "d__Bacteria",
        "p__Cyanobacteriota",
        "c__Cyanobacteriia",
        "o__Cyanobacteriales",
        "f__Microcoleaceae",
        "g__Trichodesmium",
        "s__Trichodesmium sp023356605",
        "Bacteria",
        "Cyanobacteriota",
        "Cyanobacteriia",
        "Cyanobacteriales",
        "Microcoleaceae",
        "Trichodesmium",
        "Trichodesmium",
        "sp023356605"
    ],
    "_meo": [
        {
            "id": "MEO_0000041",
            "label": "marine water"
        }
    ],
    "quality": 2,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f"
}