{ "type": "genome", "identifier": "GCA_029007355.1", "organism": "Methanobrevibacter boviskoreani", "title": "Methanobrevibacter boviskoreani", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "Agriculture and Agri-Food Canada", "publication": [ {} ], "properties": { "assembly_accession": "GCA_029007355.1", "bioproject": "PRJNA857725", "biosample": "SAMN32899611", "wgs_master": "JAQXHQ000000000.1", "refseq_category": "representative genome", "taxid": "1348249", "species_taxid": "1348249", "organism_name": "Methanobrevibacter boviskoreani", "infraspecific_name": "", "isolate": "SUG2185", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/02/18", "asm_name": "ASM2900735v1", "submitter": "Agriculture and Agri-Food Canada", "gbrs_paired_asm": "GCF_029007355.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/029/007/355/GCA_029007355.1_ASM2900735v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-02-18", "dateModified": "2023-02-18", "datePublished": "2023-02-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Methanobrevibacter boviskoreani" ], "sample_taxid": [ "1348249" ], "sample_host_organism": [ "Sus scrofa domesticus" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Canada:Lacombe" ], "sample_host_location_id": [], "data_size": "0.542 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1969840", "Number of Sequences": "34", "Longest Sequences (bp)": "222914", "N50 (bp)": "70532", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "29.1", "Number of CDSs": "1711", "Average Protein Length": "297.8", "Coding Ratio (%)": "77.6", "Number of rRNAs": "0", "Number of tRNAs": "34", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Methanobrevibacter boviskoreani", "strain": "strain=JH1", "accession": "GCA_000320505.2", "taxid": 1348249, "species_taxid": 1348249, "relation_to_type": "type", "validated": true, "ani": 97.8242, "matched_fragments": 589, "total_fragments": 640, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Methanobrevibacter wolinii", "strain": "strain=SH", "accession": "GCA_000621965.1", "taxid": 190977, "species_taxid": 190977, "relation_to_type": "type", "validated": true, "ani": 79.7256, "matched_fragments": 354, "total_fragments": 640, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methanobrevibacter cuticularis", "strain": "strain=DSM 11139", "accession": "GCA_001639285.1", "taxid": 47311, "species_taxid": 47311, "relation_to_type": "type", "validated": true, "ani": 76.0743, "matched_fragments": 89, "total_fragments": 640, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000320505.1", "gtdb_species": "s__Methanobrevibacter_B boviskoreani", "ani": 97.8242, "matched_fragments": 589, "total_fragments": 640, "gtdb_taxonomy": "d__Archaea;p__Methanobacteriota;c__Methanobacteria;o__Methanobacteriales;f__Methanobacteriaceae;g__Methanobrevibacter_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.28", "min_intra_species_ani": "97.74", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.93", "num_clustered_genomes": 6, "status": "conclusive" }, { "accession": "GCF_002208625.1", "gtdb_species": "s__Methanobrevibacter_B sp002208625", "ani": 79.8797, "matched_fragments": 263, "total_fragments": 640, "gtdb_taxonomy": "d__Archaea;p__Methanobacteriota;c__Methanobacteria;o__Methanobacteriales;f__Methanobacteriaceae;g__Methanobrevibacter_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000621965.1", "gtdb_species": "s__Methanobrevibacter_B wolinii", "ani": 79.7665, "matched_fragments": 350, "total_fragments": 640, "gtdb_taxonomy": "d__Archaea;p__Methanobacteriota;c__Methanobacteria;o__Methanobacteriales;f__Methanobacteriaceae;g__Methanobrevibacter_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_004553595.1", "gtdb_species": "s__Methanobrevibacter ruminantium_A", "ani": 76.6509, "matched_fragments": 106, "total_fragments": 640, "gtdb_taxonomy": "d__Archaea;p__Methanobacteriota;c__Methanobacteria;o__Methanobacteriales;f__Methanobacteriaceae;g__Methanobrevibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.31", "min_intra_species_ani": "99.31", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.95", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.345, "cell_length": -0.04, "doubling_h": 1.37, "growth_tmp": 35.769, "optimum_tmp": 35.515, "optimum_ph": 7.107, "genome_size": 2226869.989, "gc_content": 30.616, "coding_genes": 1977.708, "rRNA16S_genes": 2.0, "tRNA_genes": 39.916, "gram_stain": 1.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 1.0, "aerobic_respiration": 0.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.538, "coccus_cell_shape": 0.23, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.23, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Archaea", "p__Methanobacteriota", "c__Methanobacteria", "o__Methanobacteriales", "f__Methanobacteriaceae", "g__Methanobrevibacter_B", "s__Methanobrevibacter_B boviskoreani" ], "_genome_taxon": [ "Methanobrevibacter", "boviskoreani", "d__Archaea", "p__Methanobacteriota", "c__Methanobacteria", "o__Methanobacteriales", "f__Methanobacteriaceae", "g__Methanobrevibacter_B", "s__Methanobrevibacter_B boviskoreani", "Archaea", "Methanobacteriota", "Methanobacteria", "Methanobacteriales", "Methanobacteriaceae", "Methanobrevibacter", "B", "Methanobrevibacter", "B", "boviskoreani" ], "_meo": [ { "id": "MEO_0000054", "label": "feces" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }