{ "type": "genome", "identifier": "GCA_029009255.1", "organism": "Oscillospiraceae bacterium", "title": "Oscillospiraceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Agriculture and Agri-Food Canada", "publication": [ {} ], "properties": { "assembly_accession": "GCA_029009255.1", "bioproject": "PRJNA857725", "biosample": "SAMN32798877", "wgs_master": "JAQXJY000000000.1", "refseq_category": "na", "taxid": "2485925", "species_taxid": "2485925", "organism_name": "Oscillospiraceae bacterium", "infraspecific_name": "", "isolate": "SUG1263", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/02/18", "asm_name": "ASM2900925v1", "submitter": "Agriculture and Agri-Food Canada", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/029/009/255/GCA_029009255.1_ASM2900925v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-02-18", "dateModified": "2023-02-18", "datePublished": "2023-02-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Oscillospiraceae bacterium" ], "sample_taxid": [ "2485925" ], "sample_host_organism": [ "Sus scrofa domesticus" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Canada:Lacombe" ], "sample_host_location_id": [], "data_size": "0.584 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 66.67, "contamination": 0.46, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2049058", "Number of Sequences": "232", "Longest Sequences (bp)": "54523", "N50 (bp)": "11156", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "49.2", "Number of CDSs": "1646", "Average Protein Length": "321.5", "Coding Ratio (%)": "77.5", "Number of rRNAs": "1", "Number of tRNAs": "36", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [], "cc_result": { "completeness": 66.67, "contamination": 0.46, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCA_017452785.1", "gtdb_species": "s__UBA6857 sp017452785", "ani": 77.0292, "matched_fragments": 105, "total_fragments": 560, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__UBA6857", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_015066105.1", "gtdb_species": "s__UBA6857 sp015066105", "ani": 76.9167, "matched_fragments": 101, "total_fragments": 560, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__UBA6857", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_900767015.1", "gtdb_species": "s__UBA6857 sp900767015", "ani": 76.8772, "matched_fragments": 77, "total_fragments": 560, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__UBA6857", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017397845.1", "gtdb_species": "s__UBA6857 sp017397845", "ani": 76.8582, "matched_fragments": 67, "total_fragments": 560, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__UBA6857", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_015066015.1", "gtdb_species": "s__UBA6857 sp015066015", "ani": 76.7941, "matched_fragments": 64, "total_fragments": 560, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__UBA6857", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.23", "min_intra_species_ani": "98.23", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_017472225.1", "gtdb_species": "s__UBA6857 sp017472225", "ani": 76.6842, "matched_fragments": 83, "total_fragments": 560, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__UBA6857", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017631745.1", "gtdb_species": "s__UBA6857 sp017631745", "ani": 76.6608, "matched_fragments": 74, "total_fragments": 560, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__UBA6857", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017396515.1", "gtdb_species": "s__UBA6857 sp017396515", "ani": 76.6081, "matched_fragments": 96, "total_fragments": 560, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__UBA6857", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.07", "min_intra_species_ani": "97.07", "mean_intra_species_af": "0.81", "min_intra_species_af": "0.81", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_016290665.1", "gtdb_species": "s__UBA6857 sp016290665", "ani": 76.2807, "matched_fragments": 55, "total_fragments": 560, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__UBA6857", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_900768075.1", "gtdb_species": "s__UBA6857 sp900768075", "ani": 76.2737, "matched_fragments": 82, "total_fragments": 560, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__UBA6857", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016293225.1", "gtdb_species": "s__UBA6857 sp016293225", "ani": 75.9494, "matched_fragments": 59, "total_fragments": 560, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Acutalibacteraceae;g__UBA6857", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.21", "min_intra_species_ani": "97.89", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.87", "num_clustered_genomes": 5, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.302, "cell_length": 0.397, "doubling_h": null, "growth_tmp": 30.0, "optimum_tmp": 30.0, "optimum_ph": 6.25, "genome_size": 4470621.5, "gc_content": 49.895, "coding_genes": 4347.333, "rRNA16S_genes": 3.0, "tRNA_genes": 61.0, "gram_stain": 0.0, "sporulation": 0.0, "motility": null, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 1.0, "aerobic_respiration": 0.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Bacillota_A", "c__Clostridia", "o__Oscillospirales", "f__Acutalibacteraceae", "g__UBA6857", "s__UBA6857 sp029013165" ], "_genome_taxon": [ "Oscillospiraceae", "bacterium", "d__Bacteria", "p__Bacillota_A", "c__Clostridia", "o__Oscillospirales", "f__Acutalibacteraceae", "g__UBA6857", "s__UBA6857 sp029013165", "Bacteria", "Bacillota", "A", "Clostridia", "Oscillospirales", "Acutalibacteraceae", "UBA6857", "UBA6857", "sp029013165" ], "_meo": [ { "id": "MEO_0000054", "label": "feces" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }